LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
LINC00942
hsa-miR-19b-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000515614
Biotype: lincRNA
Gene id: ENSG00000249628
Gene Name: LINC00942
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1879-1902
0.026
Not Conserved
AC073257.2
hsa-miR-19b-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413991
Biotype: lincRNA
Gene id: ENSG00000237614
Gene Name: AC073257.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-362
0.019
0
6mer
243-263
0.004
1
6mer
333-346
0.003
1
RP11-164J13.1
hsa-miR-19b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000495723
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-189
0.022
1
8mer
2004-2016
0.003
1
AC024619.2
hsa-miR-19b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000436028
Biotype: sense_intronic
Gene id: ENSG00000238007
Gene Name: AC024619.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-155
0.026
1
STARD4-AS1
hsa-miR-19b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500779
Biotype: antisense
Gene id: ENSG00000246859
Gene Name: STARD4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1670-1682
0.017
Not Conserved
6mer
868-889
0.004
8
6mer
739-759
0.003
1
6mer
1175-1184
0.002
0
RP3-430A16.1
hsa-miR-19b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436283
Biotype: antisense
Gene id: ENSG00000236336
Gene Name: RP3-430A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-51
0.026
Not Conserved
AC009158.1
hsa-miR-19b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000596241
Biotype: lincRNA
Gene id: ENSG00000231876
Gene Name: AC009158.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-487
0.017
1
6mer
285-297
0.009
4
RP3-327A19.5
hsa-miR-19b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000455986
Biotype: lincRNA
Gene id: ENSG00000227285
Gene Name: RP3-327A19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-210
0.026
2
RBFADN
hsa-miR-19b-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564686
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-207
0.026
2
RP4-799P18.2
hsa-miR-19b-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412483
Biotype: antisense
Gene id: ENSG00000233332
Gene Name: RP4-799P18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-96
0.015
0
7mer
1401-1409
0.011
1
AC133785.1
hsa-miR-19b-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429282
Biotype: antisense
Gene id: ENSG00000233221
Gene Name: AC133785.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2429-2453
0.024
0
6mer
1219-1238
0.002
1
LINC00667
hsa-miR-19b-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580684
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-511
0.017
1
7mer
135-146
0.009
2
XLOC_011184
hsa-miR-19b-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023883
Biotype: transcript isomorph
Gene id: XLOC_011184
Gene Name: XLOC_011184
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-187
0.026
1
CTB-92J24.2
hsa-miR-19b-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594230
Biotype: sense_intronic
Gene id: ENSG00000269397
Gene Name: CTB-92J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
874-885
0.026
0
NOVA1-AS1
hsa-miR-19b-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000547786
Biotype: antisense
Gene id: ENSG00000257842
Gene Name: NOVA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
441-463
0.026
8
RP11-73G16.1
hsa-miR-19b-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515329
Biotype: lincRNA
Gene id: ENSG00000251249
Gene Name: RP11-73G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2235-2262
0.023
1
6mer
2039-2060
0.002
1
KIAA1875
hsa-miR-19b-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_024207.1
Biotype: sense
Gene id: NR_024207.1 (gene)
Gene Name: KIAA1875
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
876-898
0.018
0
6mer
408-427
0.004
4
6mer
3890-3909
0.001
4
6mer
3097-3108
0.001
2
6mer
5732-5752
0.001
1
RP11-113I22.1
hsa-miR-19b-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503577
Biotype: lincRNA
Gene id: ENSG00000251443
Gene Name: RP11-113I22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-326
0.026
6
NUTM2B-AS1
hsa-miR-19b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600376
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-260
0.026
0
LINC01057
hsa-miR-19b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418366
Biotype: lincRNA
Gene id: ENSG00000224081
Gene Name: LINC01057
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-219
0.011
3
7mer
249-268
0.011
1
6mer
123-138
0.003
1
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