LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
C4A-AS1
hsa-miR-19b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458633
Biotype: antisense
Gene id: ENSG00000233627
Gene Name: C4A-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1747-1764
0.020
4
6mer
265-292
0.004
3
6mer
1114-1137
0.003
3
XLOC_011970
hsa-miR-19b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025031
Biotype: transcript isomorph
Gene id: XLOC_011970
Gene Name: XLOC_011970
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
384-408
0.021
2
6mer
367-389
0.005
1
RMDN2-AS1
hsa-miR-19b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601029
Biotype: antisense
Gene id: ENSG00000235848
Gene Name: RMDN2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
515-538
0.026
3
RP11-70F11.7
hsa-miR-19b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547902
Biotype: lincRNA
Gene id: ENSG00000257253
Gene Name: RP11-70F11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-495
0.022
0
6mer
607-629
0.005
1
RP11-700H13.1
hsa-miR-19b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569328
Biotype: lincRNA
Gene id: ENSG00000261638
Gene Name: RP11-700H13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-392
0.021
2
6mer
351-373
0.005
1
RP11-533E19.7
hsa-miR-19b-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610272
Biotype: lincRNA
Gene id: ENSG00000272906
Gene Name: RP11-533E19.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-318
0.026
1
XLOC_007477
hsa-miR-19b-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015555
Biotype: transcript isomorph
Gene id: XLOC_007477
Gene Name: XLOC_007477
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2367-2377
0.020
0
6mer
59-79
0.003
0
6mer
331-354
0.003
1
6mer
1133-1159
0.001
0
CTC-498M16.2
hsa-miR-19b-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606189
Biotype: lincRNA
Gene id: ENSG00000250156
Gene Name: CTC-498M16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-227
0.026
1
RP3-326I13.1
hsa-miR-19b-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000440955
Biotype: lincRNA
Gene id: ENSG00000224294
Gene Name: RP3-326I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1544-1560
0.011
3
7mer
1654-1665
0.010
1
6mer
1347-1369
0.005
5
XLOC_003471
hsa-miR-19b-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007487
Biotype: transcript isomorph
Gene id: XLOC_003471
Gene Name: XLOC_003471
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
658-679
0.026
1
RP11-1336O20.2
hsa-miR-19b-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507934
Biotype: antisense
Gene id: ENSG00000249690
Gene Name: RP11-1336O20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2156-2177
0.011
1
7mer
1766-1789
0.009
Not Conserved
6mer
2002-2012
0.007
3
LINC01509
hsa-miR-19b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423523
Biotype: lincRNA
Gene id: ENSG00000226825
Gene Name: LINC01509
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-352
0.026
2
XLOC_012833
hsa-miR-19b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026507
Biotype: transcript isomorph
Gene id: XLOC_012833
Gene Name: XLOC_012833
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-84
0.026
1
RP11-154D6.1
hsa-miR-19b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000614602
Biotype: retained_intron
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-68
0.026
2
XLOC_009404
hsa-miR-19b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019601
Biotype: transcript isomorph
Gene id: XLOC_009404
Gene Name: XLOC_009404
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
716-726
0.020
1
7mer
859-885
0.007
0
AP001046.5
hsa-miR-19b-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000442815
Biotype: lincRNA
Gene id: ENSG00000237989
Gene Name: AP001046.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2652-2676
0.026
1
RP11-582E3.6
hsa-miR-19b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620519
Biotype: lincRNA
Gene id: ENSG00000275764
Gene Name: RP11-582E3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1744-1762
0.026
0
GSN-AS1
hsa-miR-19b-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000414544
Biotype: antisense
Gene id: ENSG00000235865
Gene Name: GSN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
579-605
0.016
3
7mer
1615-1634
0.008
1
6mer
3575-3589
0.002
0
XLOC_001220
hsa-miR-19b-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001834
Biotype: transcript isomorph
Gene id: XLOC_001220
Gene Name: XLOC_001220
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1585-1603
0.023
1
6mer
1269-1292
0.003
1
RP11-700H13.1
hsa-miR-19b-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562304
Biotype: lincRNA
Gene id: ENSG00000261638
Gene Name: RP11-700H13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-499
0.021
2
6mer
458-480
0.005
1
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