LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
UBL7-AS1
hsa-miR-19b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564621
Biotype: antisense
Gene id: ENSG00000247240
Gene Name: UBL7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-545
0.027
1
MCM3AP-AS1
hsa-miR-19b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000414659
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1976-1997
0.022
1
7mer
583-607
0.005
0
RP11-263K4.3
hsa-miR-19b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548575
Biotype: lincRNA
Gene id: ENSG00000257431
Gene Name: RP11-263K4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2224-2248
0.027
Not Conserved
RP11-344E13.3
hsa-miR-19b-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580278
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-322
0.024
0
6mer
518-543
0.003
0
RP11-88E10.4
hsa-miR-19b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613809
Biotype: lincRNA
Gene id: ENSG00000277159
Gene Name: RP11-88E10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-160
0.024
2
6mer
1831-1855
0.001
1
6mer
1939-1962
0.001
1
XLOC_011223
hsa-miR-19b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023377
Biotype: transcript isomorph
Gene id: XLOC_011223
Gene Name: XLOC_011223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2380-2401
0.027
7
CTD-2147F2.2
hsa-miR-19b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558621
Biotype: lincRNA
Gene id: ENSG00000259664
Gene Name: CTD-2147F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1379-1397
0.027
6
LINC00691
hsa-miR-19b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436123
Biotype: lincRNA
Gene id: ENSG00000224074
Gene Name: LINC00691
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-126
0.018
0
7mer
924-951
0.009
0
RP11-164J13.1
hsa-miR-19b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000483208
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-189
0.022
1
8mer
2004-2016
0.004
1
XLOC_006122
hsa-miR-19b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
494-506
0.027
1
LINC01004
hsa-miR-19b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4456-4462
0.011
2
8mer
4447-4466
0.007
1
6mer
8542-8559
0.003
1
6mer
1120-1142
0.003
2
6mer
8221-8230
0.002
1
6mer
5953-5967
0.001
1
RP11-37L2.1
hsa-miR-19b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000442716
Biotype: lincRNA
Gene id: ENSG00000234535
Gene Name: RP11-37L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
347-352
0.027
5
XLOC_005579
hsa-miR-19b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012047
Biotype: transcript isomorph
Gene id: XLOC_005579
Gene Name: XLOC_005579
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
738-743
0.027
2
RP11-540O11.1
hsa-miR-19b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000503052
Biotype: lincRNA
Gene id: ENSG00000251161
Gene Name: RP11-540O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1071-1092
0.027
7
XLOC_010243
hsa-miR-19b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021435
Biotype: transcript isomorph
Gene id: XLOC_010243
Gene Name: XLOC_010243
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-154
0.024
1
6mer
1039-1054
0.003
1
RP11-230G5.2
hsa-miR-19b-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535315
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-319
0.027
4
LINC00304
hsa-miR-19b-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565008
Biotype: lincRNA
Gene id: ENSG00000180422
Gene Name: LINC00304
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
814-834
0.014
0
6mer
33-49
0.007
1
6mer
39-65
0.005
0
6mer
931-946
0.001
0
XLOC_005592
hsa-miR-19b-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011439
Biotype: transcript isomorph
Gene id: XLOC_005592
Gene Name: XLOC_005592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-121
0.020
1
6mer
6303-6329
0.005
1
6mer
2983-3006
0.001
0
LINC00605
hsa-miR-19b-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000514902
Biotype: lincRNA
Gene id: ENSG00000251533
Gene Name: LINC00605
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-173
0.026
1
RP11-95M5.1
hsa-miR-19b-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566553
Biotype: lincRNA
Gene id: ENSG00000260902
Gene Name: RP11-95M5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-186
0.012
2
6mer
3579-3600
0.004
2
6mer
507-532
0.003
1
6mer
439-443
0.003
3
6mer
1527-1539
0.002
0
6mer
2816-2836
0.002
1
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