LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
RP11-645C24.5
hsa-miR-19b-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567370
Biotype: lincRNA
Gene id: ENSG00000260306
Gene Name: RP11-645C24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1107-1127
0.028
Not Conserved
RP11-65D24.2
hsa-miR-19b-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000375713
Biotype: lincRNA
Gene id: ENSG00000204398
Gene Name: RP11-65D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-397
0.028
1
SPTY2D1-AS1
hsa-miR-19b-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000542172
Biotype: retained_intron
Gene id: ENSG00000247595
Gene Name: SPTY2D1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-317
0.027
5
CTC-265F19.1
hsa-miR-19b-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587894
Biotype: sense_intronic
Gene id: ENSG00000267749
Gene Name: CTC-265F19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1447-1470
0.009
1
6mer
1320-1337
0.006
1
6mer
674-695
0.006
1
6mer
1192-1215
0.006
1
6mer
1071-1093
0.001
Not Conserved
LINC01140
hsa-miR-19b-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000461990
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3084-3096
0.014
9
7mer
2050-2074
0.004
4
6mer
1780-1799
0.004
8
6mer
519-532
0.003
1
6mer
1210-1232
0.002
3
LINC01140
hsa-miR-19b-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484933
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3271-3283
0.014
9
6mer
1967-1986
0.004
8
7mer
2237-2261
0.004
4
6mer
706-719
0.003
1
6mer
1397-1419
0.002
3
AF067845.1
hsa-miR-19b-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000567210
Biotype: lincRNA
Gene id: ENSG00000260721
Gene Name: AF067845.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1129-1149
0.023
1
6mer
351-373
0.004
1
FAM201A
hsa-miR-19b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377680
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1631-1650
0.016
1
6mer
210-237
0.011
1
CBR3-AS1
hsa-miR-19b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432988
Biotype: retained_intron
Gene id: ENSG00000236830
Gene Name: CBR3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-800
0.027
3
LL22NC03-22D1.1
hsa-miR-19b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
18968-18975
0.008
1
7mer
23425-23445
0.006
2
7mer
4266-4292
0.005
1
7mer
27498-27515
0.002
0
6mer
27482-27502
0.002
1
6mer
16677-16689
0.002
2
6mer
6461-6482
0.001
Not Conserved
6mer
1780-1800
0.001
0
6mer
12139-12158
0.001
0
HOXA10-HOXA9
hsa-miR-19b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_037940.1
Biotype: sense
Gene id: NR_037940.1 (gene)
Gene Name: HOXA10-HOXA9
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-334
0.023
9
6mer
805-809
0.005
9
ERVH48-1
hsa-miR-19b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1603-1623
0.027
0
ERVK13-1
hsa-miR-19b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_040023.1
Biotype: lincRNA
Gene id: NR_040023.1 (gene)
Gene Name: ERVK13-1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7315-7336
0.018
Not Conserved
7mer
965-976
0.007
0
6mer
3753-3764
0.002
Not Conserved
6mer
5089-5106
0.001
Not Conserved
LINC00969
hsa-miR-19b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000445707
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-624
0.027
0
AC136896.1
hsa-miR-19b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000439938
Biotype: antisense
Gene id: ENSG00000228740
Gene Name: AC136896.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-601
0.017
1
6mer
290-311
0.006
2
6mer
190-212
0.004
1
CTD-3229J4.1
hsa-miR-19b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564852
Biotype: lincRNA
Gene id: ENSG00000261555
Gene Name: CTD-3229J4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-52
0.027
1
LINC01443
hsa-miR-19b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584531
Biotype: lincRNA
Gene id: ENSG00000266554
Gene Name: LINC01443
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1823-1837
0.027
0
AL592528.1
hsa-miR-19b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000380008
Biotype: antisense
Gene id: ENSG00000205424
Gene Name: AL592528.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1645-1664
0.010
Not Conserved
7mer
743-762
0.008
0
8mer
2260-2275
0.007
0
6mer
2268-2290
0.002
0
RP11-1096D5.1
hsa-miR-19b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000567801
Biotype: lincRNA
Gene id: ENSG00000260440
Gene Name: RP11-1096D5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4015-4037
0.011
1
8mer
4874-4890
0.011
1
7mer
2389-2409
0.003
1
6mer
3407-3422
0.002
4
XLOC_009944
hsa-miR-19b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020645
Biotype: transcript isomorph
Gene id: XLOC_009944
Gene Name: XLOC_009944
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3150-3161
0.019
1
7mer
897-915
0.006
1
6mer
1535-1546
0.002
1
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