LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
PISRT1
hsa-miR-19b-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027070.1
Biotype: antisense
Gene id: NR_027070.1 (gene)
Gene Name: PISRT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
250-275
0.028
0
ZFHX4-AS1
hsa-miR-19b-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523977
Biotype: antisense
Gene id: ENSG00000253661
Gene Name: ZFHX4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-228
0.023
4
6mer
57-81
0.005
1
CTD-2314G24.2
hsa-miR-19b-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000601500
Biotype: antisense
Gene id: ENSG00000259663
Gene Name: CTD-2314G24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1711-1737
0.010
4
8mer
6102-6127
0.009
0
6mer
1405-1419
0.003
7
6mer
2712-2728
0.003
3
6mer
3398-3411
0.002
1
6mer
4166-4190
0.001
1
XLOC_012826
hsa-miR-19b-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026204
Biotype: transcript isomorph
Gene id: XLOC_012826
Gene Name: XLOC_012826
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-294
0.020
1
6mer
128-151
0.004
2
6mer
151-172
0.004
3
DLGAP1-AS1
hsa-miR-19b-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000317114
Biotype: antisense
Gene id: ENSG00000177337
Gene Name: DLGAP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1306-1320
0.017
3
8mer
766-785
0.009
0
6mer
846-861
0.002
2
XLOC_011380
hsa-miR-19b-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023547
Biotype: transcript isomorph
Gene id: XLOC_011380
Gene Name: XLOC_011380
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1688-1711
0.020
3
6mer
2334-2338
0.003
1
6mer
618-641
0.002
0
6mer
1485-1509
0.002
3
CTD-2541J13.2
hsa-miR-19b-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583493
Biotype: antisense
Gene id: ENSG00000263424
Gene Name: CTD-2541J13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1358-1385
0.021
7
6mer
456-477
0.004
4
6mer
1524-1528
0.002
5
LL0XNC01-250H12.3
hsa-miR-19b-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445990
Biotype: antisense
Gene id: ENSG00000234405
Gene Name: LL0XNC01-250H12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
585-598
0.024
3
6mer
433-456
0.004
0
RP11-192P3.4
hsa-miR-19b-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000605929
Biotype: lincRNA
Gene id: ENSG00000272381
Gene Name: RP11-192P3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2195-2219
0.023
1
6mer
1683-1709
0.005
3
RP11-218M22.1
hsa-miR-19b-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537514
Biotype: antisense
Gene id: ENSG00000177406
Gene Name: RP11-218M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1721-1737
0.022
2
6mer
2082-2092
0.005
0
6mer
1038-1062
0.001
0
RP11-451H23.3
hsa-miR-19b-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513535
Biotype: lincRNA
Gene id: ENSG00000248717
Gene Name: RP11-451H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-534
0.023
0
6mer
537-563
0.004
0
RP11-806L2.2
hsa-miR-19b-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585150
Biotype: antisense
Gene id: ENSG00000266456
Gene Name: RP11-806L2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-34
0.020
0
6mer
171-185
0.006
1
6mer
1108-1124
0.002
0
XLOC_004061
hsa-miR-19b-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008568
Biotype: transcript isomorph
Gene id: XLOC_004061
Gene Name: XLOC_004061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-559
0.028
3
RP11-344E13.3
hsa-miR-19b-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577968
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-321
0.024
0
6mer
517-542
0.004
0
RP11-636O21.1
hsa-miR-19b-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585822
Biotype: lincRNA
Gene id: ENSG00000267413
Gene Name: RP11-636O21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-295
0.019
1
6mer
129-152
0.004
2
6mer
152-173
0.004
3
RP11-769O8.1
hsa-miR-19b-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583314
Biotype: antisense
Gene id: ENSG00000266171
Gene Name: RP11-769O8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1111-1127
0.025
3
6mer
595-608
0.003
1
RP11-95P13.2
hsa-miR-19b-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000458443
Biotype: lincRNA
Gene id: ENSG00000238232
Gene Name: RP11-95P13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-178
0.028
2
LINC00538
hsa-miR-19b-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046189.1
Biotype: lincRNA
Gene id: NR_046189.1 (gene)
Gene Name: LINC00538
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1591-1607
0.015
1
7mer
402-426
0.013
1
RP11-933H2.4
hsa-miR-19b-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000511699
Biotype: retained_intron
Gene id: ENSG00000250608
Gene Name: RP11-933H2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-340
0.015
1
8mer
1087-1104
0.009
0
6mer
462-482
0.004
1
CTD-2218K11.2
hsa-miR-19b-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509506
Biotype: lincRNA
Gene id: ENSG00000249100
Gene Name: CTD-2218K11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-252
0.024
2
6mer
395-410
0.004
0
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