LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
RP11-757G1.6
hsa-miR-19b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
219-242
0.029
0
RP11-84A19.2
hsa-miR-19b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453837
Biotype: lincRNA
Gene id: ENSG00000203620
Gene Name: RP11-84A19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
721-728
0.021
1
7mer
346-356
0.003
Not Conserved
6mer
551-566
0.003
1
6mer
1271-1283
0.002
1
RP11-248G5.8
hsa-miR-19b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000451298
Biotype: processed_transcript
Gene id: ENSG00000217576
Gene Name: RP11-248G5.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2834-2856
0.027
1
6mer
1761-1779
0.002
1
XLOC_013012
hsa-miR-19b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026954
Biotype: transcript isomorph
Gene id: XLOC_013012
Gene Name: XLOC_013012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
810-827
0.029
0
KC6
hsa-miR-19b-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592302
Biotype: lincRNA
Gene id: ENSG00000267313
Gene Name: KC6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1563-1583
0.029
6
ZEB2-AS1
hsa-miR-19b-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595449
Biotype: antisense
Gene id: ENSG00000238057
Gene Name: ZEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
623-646
0.012
10
6mer
739-755
0.009
7
6mer
51-66
0.008
6
XLOC_012827
hsa-miR-19b-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026183
Biotype: transcript isomorph
Gene id: XLOC_012827
Gene Name: XLOC_012827
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1560-1580
0.029
6
XLOC_007950
hsa-miR-19b-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017151
Biotype: transcript isomorph
Gene id: XLOC_007950
Gene Name: XLOC_007950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
869-890
0.019
Not Conserved
7mer
996-1016
0.010
1
RP5-866L20.1
hsa-miR-19b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433377
Biotype: lincRNA
Gene id: ENSG00000235741
Gene Name: RP5-866L20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
641-664
0.029
1
LINC01122
hsa-miR-19b-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422793
Biotype: lincRNA
Gene id: ENSG00000233723
Gene Name: LINC01122
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
733-759
0.026
2
6mer
280-303
0.003
0
AF064858.6
hsa-miR-19b-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000380931
Biotype: lincRNA
Gene id: ENSG00000205622
Gene Name: AF064858.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2615-2634
0.017
5
7mer
3393-3416
0.008
1
7mer
2981-3006
0.005
1
LINC00908
hsa-miR-19b-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578092
Biotype: lincRNA
Gene id: ENSG00000263812
Gene Name: LINC00908
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-330
0.021
1
6mer
522-544
0.005
0
6mer
132-154
0.003
1
CTC-523E23.1
hsa-miR-19b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000561778
Biotype: lincRNA
Gene id: ENSG00000261754
Gene Name: CTC-523E23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-77
0.026
3
6mer
1561-1583
0.003
2
RP5-865N13.1
hsa-miR-19b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441459
Biotype: lincRNA
Gene id: ENSG00000236372
Gene Name: RP5-865N13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1867-1884
0.027
1
6mer
1086-1102
0.002
1
RP11-789C17.1
hsa-miR-19b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578897
Biotype: sense_intronic
Gene id: ENSG00000265413
Gene Name: RP11-789C17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-92
0.029
1
RP11-620J15.2
hsa-miR-19b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499481
Biotype: lincRNA
Gene id: ENSG00000245651
Gene Name: RP11-620J15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-88
0.025
5
6mer
2575-2598
0.002
1
6mer
1693-1710
0.002
4
RP11-531A24.5
hsa-miR-19b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517664
Biotype: antisense
Gene id: ENSG00000253636
Gene Name: RP11-531A24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3025-3052
0.029
0
RP11-579E24.2
hsa-miR-19b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522857
Biotype: lincRNA
Gene id: ENSG00000253762
Gene Name: RP11-579E24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-67
0.029
3
AF127936.3
hsa-miR-19b-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000454128
Biotype: lincRNA
Gene id: ENSG00000232884
Gene Name: AF127936.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-106
0.029
1
CASC8
hsa-miR-19b-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000502056
Biotype: antisense
Gene id: ENSG00000246228
Gene Name: CASC8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
951-971
0.019
2
7mer
1191-1203
0.009
0
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