LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
CTD-2012K14.6
hsa-miR-19b-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000605277
Biotype: lincRNA
Gene id: ENSG00000261386
Gene Name: CTD-2012K14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
698-718
0.030
6
XLOC_013792
hsa-miR-19b-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028441
Biotype: transcript isomorph
Gene id: XLOC_013792
Gene Name: XLOC_013792
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-98
0.020
6
7mer
126-131
0.006
0
6mer
495-508
0.004
1
CTC-558O2.1
hsa-miR-19b-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522615
Biotype: antisense
Gene id: ENSG00000254042
Gene Name: CTC-558O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3319-3339
0.028
10
6mer
1457-1482
0.002
2
CTB-180A7.3
hsa-miR-19b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595644
Biotype: antisense
Gene id: ENSG00000269802
Gene Name: CTB-180A7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-111
0.029
0
XLOC_003706
hsa-miR-19b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008264
Biotype: transcript isomorph
Gene id: XLOC_003706
Gene Name: XLOC_003706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
848-875
0.029
0
RP11-156P1.3
hsa-miR-19b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575173
Biotype: lincRNA
Gene id: ENSG00000262879
Gene Name: RP11-156P1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-554
0.029
2
RP11-90D11.1
hsa-miR-19b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519366
Biotype: lincRNA
Gene id: ENSG00000253872
Gene Name: RP11-90D11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
540-551
0.014
3
8mer
844-863
0.009
0
7mer
1412-1419
0.006
0
CTD-2298J14.2
hsa-miR-19b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557067
Biotype: lincRNA
Gene id: ENSG00000258636
Gene Name: CTD-2298J14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-141
0.029
0
TP73-AS1
hsa-miR-19b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608600
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
476-495
0.023
1
6mer
129-153
0.003
1
6mer
93-108
0.003
0
RP4-781K5.6
hsa-miR-19b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442382
Biotype: lincRNA
Gene id: ENSG00000230628
Gene Name: RP4-781K5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1321-1335
0.024
2
7mer
2573-2598
0.005
1
LINC00908
hsa-miR-19b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584120
Biotype: lincRNA
Gene id: ENSG00000263812
Gene Name: LINC00908
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-192
0.023
1
6mer
87-113
0.003
1
6mer
384-406
0.003
0
AC024619.2
hsa-miR-19b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000426489
Biotype: sense_intronic
Gene id: ENSG00000238007
Gene Name: AC024619.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-426
0.029
1
RP11-171I2.1
hsa-miR-19b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2249-2272
0.023
2
6mer
73-97
0.007
6
TSIX
hsa-miR-19b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
32111-32118
0.019
1
7mer
20025-20045
0.004
2
6mer
149-170
0.003
Not Conserved
6mer
22173-22185
0.001
Not Conserved
6mer
5421-5438
0.001
0
6mer
23089-23111
0.001
1
AGPAT4-IT1
hsa-miR-19b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_024277.1
Biotype: sense
Gene id: NR_024277.1 (gene)
Gene Name: AGPAT4-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1819-1839
0.025
1
6mer
1360-1385
0.002
0
6mer
1456-1479
0.002
0
TEX26-AS1
hsa-miR-19b-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000411835
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
724-731
0.029
1
RP11-81K13.1
hsa-miR-19b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547040
Biotype: antisense
Gene id: ENSG00000257434
Gene Name: RP11-81K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1341-1362
0.020
1
6mer
2507-2521
0.009
9
LINC01354
hsa-miR-19b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421207
Biotype: lincRNA
Gene id: ENSG00000231768
Gene Name: LINC01354
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-103
0.029
2
RP11-106M3.3
hsa-miR-19b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000570175
Biotype: antisense
Gene id: ENSG00000261460
Gene Name: RP11-106M3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-650
0.011
0
7mer
838-863
0.009
1
6mer
3110-3125
0.006
2
6mer
2590-2606
0.003
1
6mer
872-889
0.001
0
XLOC_011407
hsa-miR-19b-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023594
Biotype: transcript isomorph
Gene id: XLOC_011407
Gene Name: XLOC_011407
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-243
0.017
1
7mer
592-610
0.010
0
6mer
187-213
0.003
0
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