LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
FAM170B-AS1
hsa-miR-19b-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000442525
Biotype: antisense
Gene id: ENSG00000234736
Gene Name: FAM170B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
448-474
0.031
1
CTD-3234P18.2
hsa-miR-19b-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585467
Biotype: lincRNA
Gene id: ENSG00000266935
Gene Name: CTD-3234P18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-533
0.031
1
RP11-305P22.9
hsa-miR-19b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000606208
Biotype: lincRNA
Gene id: ENSG00000272259
Gene Name: RP11-305P22.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-83
0.030
1
RP11-65M17.1
hsa-miR-19b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525984
Biotype: lincRNA
Gene id: ENSG00000255484
Gene Name: RP11-65M17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-675
0.014
1
7mer
1226-1239
0.004
1
6mer
1704-1726
0.003
0
6mer
1235-1245
0.003
0
6mer
1751-1768
0.003
1
6mer
1160-1176
0.002
2
6mer
1127-1138
0.001
0
6mer
1112-1136
0.001
1
CTB-25B13.5
hsa-miR-19b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594262
Biotype: lincRNA
Gene id: ENSG00000268798
Gene Name: CTB-25B13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-323
0.030
0
RP11-410C4.5
hsa-miR-19b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563417
Biotype: lincRNA
Gene id: ENSG00000260505
Gene Name: RP11-410C4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1112-1134
0.016
0
7mer
1779-1789
0.006
1
6mer
2624-2641
0.006
0
6mer
935-960
0.003
0
RP1-20C7.6
hsa-miR-19b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607790
Biotype: antisense
Gene id: ENSG00000272223
Gene Name: RP1-20C7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-114
0.030
2
RP11-509A17.3
hsa-miR-19b-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557528
Biotype: lincRNA
Gene id: ENSG00000258654
Gene Name: RP11-509A17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
756-777
0.016
0
7mer
19-28
0.015
0
TM4SF19-AS1
hsa-miR-19b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000452051
Biotype: antisense
Gene id: ENSG00000235897
Gene Name: TM4SF19-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1006-1032
0.023
0
6mer
136-163
0.006
4
6mer
799-819
0.002
1
XLOC_013949
hsa-miR-19b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029223
Biotype: transcript isomorph
Gene id: XLOC_013949
Gene Name: XLOC_013949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-166
0.030
1
RP11-1008C21.1
hsa-miR-19b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558081
Biotype: lincRNA
Gene id: ENSG00000259225
Gene Name: RP11-1008C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1023-1045
0.026
2
6mer
111-134
0.004
0
CH507-210P18.4
hsa-miR-19b-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624937
Biotype: lincRNA
Gene id: ENSG00000278955
Gene Name: CH507-210P18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-384
0.030
3
RP11-337N6.1
hsa-miR-19b-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606200
Biotype: antisense
Gene id: ENSG00000271996
Gene Name: RP11-337N6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-77
0.030
1
LINC00667
hsa-miR-19b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582008
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2332-2356
0.012
1
8mer
942-961
0.011
1
7mer
585-596
0.007
2
FAM226B
hsa-miR-19b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602508
Biotype: sense_intronic
Gene id: ENSG00000269911
Gene Name: FAM226B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1393-1411
0.022
1
6mer
375-402
0.008
3
XLOC_012582
hsa-miR-19b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025772
Biotype: transcript isomorph
Gene id: XLOC_012582
Gene Name: XLOC_012582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1276-1300
0.018
0
6mer
1642-1656
0.006
0
6mer
1630-1656
0.006
0
RP1-178F10.3
hsa-miR-19b-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000623730
Biotype: TEC
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2423-2442
0.022
7
6mer
2239-2253
0.006
5
6mer
1254-1281
0.001
1
RP11-382J12.1
hsa-miR-19b-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499227
Biotype: antisense
Gene id: ENSG00000246366
Gene Name: RP11-382J12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2387-2400
0.015
0
7mer
86-102
0.014
1
6mer
2450-2454
0.001
Not Conserved
RP11-1101K5.1
hsa-miR-19b-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521753
Biotype: lincRNA
Gene id: ENSG00000253434
Gene Name: RP11-1101K5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
412-425
0.027
0
6mer
378-401
0.003
Not Conserved
RP3-325F22.3
hsa-miR-19b-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000432477
Biotype: antisense
Gene id: ENSG00000234263
Gene Name: RP3-325F22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
161-188
0.025
3
6mer
16-40
0.005
2
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