LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
RP11-478J18.2
hsa-miR-19b-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610409
Biotype: antisense
Gene id: ENSG00000274895
Gene Name: RP11-478J18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1924-1945
0.021
5
7mer
1950-1967
0.008
2
6mer
1980-1997
0.003
0
RP5-1121A15.3
hsa-miR-19b-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000427073
Biotype: lincRNA
Gene id: ENSG00000230033
Gene Name: RP5-1121A15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
353-370
0.016
0
6mer
140-158
0.015
0
XLOC_008875
hsa-miR-19b-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018558
Biotype: transcript isomorph
Gene id: XLOC_008875
Gene Name: XLOC_008875
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-39
0.031
2
KC6
hsa-miR-19b-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000601445
Biotype: lincRNA
Gene id: ENSG00000267313
Gene Name: KC6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
473-493
0.031
6
AC079779.4
hsa-miR-19b-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450709
Biotype: retained_intron
Gene id: ENSG00000228643
Gene Name: AC079779.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-40
0.031
0
RP11-445O3.3
hsa-miR-19b-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1146-1162
0.020
0
6mer
130-147
0.011
0
ADIPOQ-AS1
hsa-miR-19b-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000422718
Biotype: antisense
Gene id: ENSG00000226482
Gene Name: ADIPOQ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
617-644
0.025
1
7mer
905-917
0.004
1
6mer
609-625
0.002
0
RP11-115J16.1
hsa-miR-19b-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520390
Biotype: lincRNA
Gene id: ENSG00000254235
Gene Name: RP11-115J16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1026-1044
0.026
1
6mer
3062-3084
0.005
1
XLOC_012537
hsa-miR-19b-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025711
Biotype: transcript isomorph
Gene id: XLOC_012537
Gene Name: XLOC_012537
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2215-2225
0.031
3
XLOC_003839
hsa-miR-19b-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008387
Biotype: transcript isomorph
Gene id: XLOC_003839
Gene Name: XLOC_003839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-88
0.012
Not Conserved
7mer
530-545
0.010
Not Conserved
7mer
148-163
0.010
Not Conserved
XLOC_007663
hsa-miR-19b-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016287
Biotype: transcript isomorph
Gene id: XLOC_007663
Gene Name: XLOC_007663
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-254
0.031
6
LINC01096
hsa-miR-19b-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503938
Biotype: lincRNA
Gene id: ENSG00000246095
Gene Name: LINC01096
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-247
0.031
3
RP11-526A4.1
hsa-miR-19b-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511993
Biotype: lincRNA
Gene id: ENSG00000234828
Gene Name: RP11-526A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-48
0.025
1
6mer
177-183
0.006
1
RP11-255E6.6
hsa-miR-19b-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609657
Biotype: antisense
Gene id: ENSG00000273394
Gene Name: RP11-255E6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-292
0.031
4
LCMT1-AS2
hsa-miR-19b-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4201-4219
0.015
1
6mer
1486-1490
0.006
1
6mer
3921-3932
0.004
1
6mer
1151-1165
0.003
0
6mer
1912-1932
0.002
0
LINC01476
hsa-miR-19b-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584262
Biotype: lincRNA
Gene id: ENSG00000265313
Gene Name: LINC01476
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-361
0.031
3
XLOC_002322
hsa-miR-19b-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002765
Biotype: transcript isomorph
Gene id: XLOC_002322
Gene Name: XLOC_002322
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2580-2604
0.024
0
7mer
2166-2182
0.005
1
6mer
1219-1238
0.002
1
RP11-672L10.1
hsa-miR-19b-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564872
Biotype: lincRNA
Gene id: ENSG00000259837
Gene Name: RP11-672L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
775-785
0.021
5
6mer
186-213
0.005
1
6mer
68-79
0.004
1
XLOC_011179
hsa-miR-19b-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023310
Biotype: transcript isomorph
Gene id: XLOC_011179
Gene Name: XLOC_011179
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
863-868
0.031
1
XLOC_002730
hsa-miR-19b-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006916
Biotype: transcript isomorph
Gene id: XLOC_002730
Gene Name: XLOC_002730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-137
0.031
4
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