LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_004192
hsa-miR-19b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008673
Biotype: transcript isomorph
Gene id: XLOC_004192
Gene Name: XLOC_004192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3373-3382
0.025
1
7mer
891-902
0.008
0
LINC00458
hsa-miR-19b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000427299
Biotype: lincRNA
Gene id: ENSG00000234787
Gene Name: LINC00458
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
175-194
0.033
4
RP11-403N16.2
hsa-miR-19b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448475
Biotype: lincRNA
Gene id: ENSG00000232494
Gene Name: RP11-403N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
80-84
0.017
1
6mer
401-422
0.016
1
RP11-141M3.6
hsa-miR-19b-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000471537
Biotype: processed_transcript
Gene id: ENSG00000273328
Gene Name: RP11-141M3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
672-680
0.018
1
6mer
59-81
0.006
4
6mer
3339-3351
0.003
0
6mer
3391-3411
0.003
1
6mer
1056-1079
0.002
1
6mer
2118-2132
0.001
0
RP11-680F20.11
hsa-miR-19b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000583165
Biotype: lincRNA
Gene id: ENSG00000263906
Gene Name: RP11-680F20.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
829-851
0.020
1
7mer
1458-1470
0.012
0
RP11-214O1.3
hsa-miR-19b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584683
Biotype: lincRNA
Gene id: ENSG00000266378
Gene Name: RP11-214O1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1592-1607
0.030
4
6mer
925-942
0.002
1
AC020743.3
hsa-miR-19b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000457592
Biotype: lincRNA
Gene id: ENSG00000231681
Gene Name: AC020743.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-138
0.025
1
6mer
611-633
0.004
1
6mer
370-388
0.004
1
KCNIP4-IT1
hsa-miR-19b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_002813.1
Biotype: sense
Gene id: NR_002813.1 (gene)
Gene Name: KCNIP4-IT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5901-5907
0.017
4
7mer
7544-7562
0.012
3
7mer
3559-3579
0.002
1
7mer
5849-5864
0.002
1
RP11-52L5.6
hsa-miR-19b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607269
Biotype: antisense
Gene id: ENSG00000271776
Gene Name: RP11-52L5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1953-1965
0.029
10
6mer
335-362
0.003
1
RP11-66B24.4
hsa-miR-19b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560461
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-297
0.033
5
RP11-326N17.2
hsa-miR-19b-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612997
Biotype: lincRNA
Gene id: ENSG00000274281
Gene Name: RP11-326N17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1440-1457
0.025
0
6mer
351-366
0.004
0
6mer
765-790
0.003
0
XLOC_006568
hsa-miR-19b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012923
Biotype: transcript isomorph
Gene id: XLOC_006568
Gene Name: XLOC_006568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-304
0.032
9
RP5-1070A16.1
hsa-miR-19b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418344
Biotype: lincRNA
Gene id: ENSG00000226053
Gene Name: RP5-1070A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1258-1284
0.025
1
6mer
1701-1718
0.004
1
6mer
62-79
0.004
0
RP11-458K10.2
hsa-miR-19b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000470532
Biotype: lincRNA
Gene id: ENSG00000240973
Gene Name: RP11-458K10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-305
0.032
9
LINC00910
hsa-miR-19b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000341011
Biotype: lincRNA
Gene id: ENSG00000188825
Gene Name: LINC00910
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
156-175
0.032
0
RP11-587P21.3
hsa-miR-19b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551075
Biotype: lincRNA
Gene id: ENSG00000257863
Gene Name: RP11-587P21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
196-204
0.032
1
XLOC_003809
hsa-miR-19b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008359
Biotype: transcript isomorph
Gene id: XLOC_003809
Gene Name: XLOC_003809
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3416-3429
0.029
2
6mer
1846-1871
0.002
0
6mer
1969-1993
0.001
0
6mer
1980-2003
0.000
0
RP4-565E6.1
hsa-miR-19b-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000496508
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2446-2469
0.022
0
7mer
1418-1431
0.010
1
CROCCP2
hsa-miR-19b-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412962
Biotype: lincRNA
Gene id: ENSG00000215908
Gene Name: CROCCP2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-276
0.032
0
AC008269.2
hsa-miR-19b-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438070
Biotype: lincRNA
Gene id: ENSG00000229321
Gene Name: AC008269.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-88
0.032
7
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