LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
APCDD1L-AS1
hsa-miR-19b-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000447767
Biotype: retained_intron
Gene id: ENSG00000231290
Gene Name: APCDD1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-273
0.034
3
RP11-322E11.2
hsa-miR-19b-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000612496
Biotype: lincRNA
Gene id: ENSG00000275512
Gene Name: RP11-322E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2449-2453
0.008
1
6mer
55-78
0.007
0
6mer
1885-1905
0.007
1
6mer
467-492
0.005
0
6mer
1499-1524
0.003
1
6mer
1857-1861
0.003
1
XLOC_013685
hsa-miR-19b-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028336
Biotype: transcript isomorph
Gene id: XLOC_013685
Gene Name: XLOC_013685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
742-765
0.034
1
XLOC_004500
hsa-miR-19b-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010053
Biotype: transcript isomorph
Gene id: XLOC_004500
Gene Name: XLOC_004500
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
44-70
0.034
0
RP11-105C19.2
hsa-miR-19b-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567401
Biotype: lincRNA
Gene id: ENSG00000260973
Gene Name: RP11-105C19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1108-1128
0.034
0
LINC00961
hsa-miR-19b-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443779
Biotype: lincRNA
Gene id: ENSG00000235387
Gene Name: LINC00961
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1037-1052
0.028
1
7mer
1041-1059
0.006
2
TEX26-AS1
hsa-miR-19b-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000588425
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1111-1118
0.033
1
XLOC_013593
hsa-miR-19b-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027978
Biotype: transcript isomorph
Gene id: XLOC_013593
Gene Name: XLOC_013593
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-282
0.021
2
8mer
169-185
0.013
1
XLOC_010847
hsa-miR-19b-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022524
Biotype: transcript isomorph
Gene id: XLOC_010847
Gene Name: XLOC_010847
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-46
0.033
1
AC002480.3
hsa-miR-19b-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435127
Biotype: antisense
Gene id: ENSG00000232759
Gene Name: AC002480.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2142-2163
0.013
3
7mer
1682-1702
0.013
2
7mer
1844-1861
0.005
2
6mer
1334-1352
0.002
1
6mer
242-259
0.002
1
RP11-196G11.6
hsa-miR-19b-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000417110
Biotype: lincRNA
Gene id: ENSG00000232748
Gene Name: RP11-196G11.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-421
0.024
0
6mer
3000-3004
0.005
2
6mer
1867-1891
0.002
7
6mer
2451-2467
0.001
1
TEX26-AS1
hsa-miR-19b-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000587596
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
53-60
0.033
1
RP11-37C7.3
hsa-miR-19b-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564211
Biotype: antisense
Gene id: ENSG00000261136
Gene Name: RP11-37C7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
638-651
0.020
1
7mer
675-694
0.010
2
6mer
2529-2552
0.003
0
RP11-216M21.7
hsa-miR-19b-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1213-1232
0.021
0
6mer
2680-2695
0.012
0
XLOC_002275
hsa-miR-19b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004392
Biotype: transcript isomorph
Gene id: XLOC_002275
Gene Name: XLOC_002275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-237
0.033
4
XLOC_013467
hsa-miR-19b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028113
Biotype: transcript isomorph
Gene id: XLOC_013467
Gene Name: XLOC_013467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2447-2466
0.027
1
8mer
1498-1516
0.006
1
RP11-218M22.1
hsa-miR-19b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318291
Biotype: antisense
Gene id: ENSG00000177406
Gene Name: RP11-218M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2040-2056
0.032
2
6mer
1357-1381
0.001
0
XLOC_006903
hsa-miR-19b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014834
Biotype: transcript isomorph
Gene id: XLOC_006903
Gene Name: XLOC_006903
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
965-981
0.018
3
6mer
816-835
0.005
1
6mer
364-368
0.004
0
6mer
172-198
0.003
0
6mer
1316-1320
0.003
1
LINC01476
hsa-miR-19b-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577478
Biotype: lincRNA
Gene id: ENSG00000265313
Gene Name: LINC01476
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
390-400
0.033
3
XLOC_000986
hsa-miR-19b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001648
Biotype: transcript isomorph
Gene id: XLOC_000986
Gene Name: XLOC_000986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-139
0.019
1
8mer
965-971
0.011
1
6mer
468-489
0.002
0
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