LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
LINC01096
hsa-miR-19b-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_015450.1
Biotype: lincRNA
Gene id: NR_015450.1 (gene)
Gene Name: LINC01096
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-244
0.035
3
APCDD1L-AS1
hsa-miR-19b-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000420279
Biotype: lincRNA
Gene id: ENSG00000231290
Gene Name: APCDD1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-413
0.035
3
LINC00667
hsa-miR-19b-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582363
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2465-2489
0.015
1
7mer
2128-2133
0.012
3
7mer
601-612
0.007
2
AC004076.5
hsa-miR-19b-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620532
Biotype: antisense
Gene id: ENSG00000276449
Gene Name: AC004076.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3237-3256
0.022
1
6mer
617-638
0.004
2
6mer
2914-2918
0.004
1
7mer
1309-1319
0.004
0
NALCN-AS1
hsa-miR-19b-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000457843
Biotype: antisense
Gene id: ENSG00000233009
Gene Name: NALCN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-736
0.030
5
6mer
2600-2612
0.002
0
6mer
2625-2646
0.002
2
LINC01096
hsa-miR-19b-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501050
Biotype: lincRNA
Gene id: ENSG00000246095
Gene Name: LINC01096
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-244
0.034
3
SEMA3F-AS1
hsa-miR-19b-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437204
Biotype: antisense
Gene id: ENSG00000235016
Gene Name: SEMA3F-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2482-2505
0.034
5
LINC01021
hsa-miR-19b-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514844
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-551
0.034
Not Conserved
MIR143HG
hsa-miR-19b-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602964
Biotype: lincRNA
Gene id: ENSG00000249669
Gene Name: MIR143HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8340-8354
0.026
0
6mer
245-262
0.004
1
7mer
4717-4733
0.002
0
6mer
1982-1992
0.001
0
6mer
4706-4721
0.001
1
LINC00992
hsa-miR-19b-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504107
Biotype: lincRNA
Gene id: ENSG00000248663
Gene Name: LINC00992
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-419
0.034
1
XLOC_003907
hsa-miR-19b-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007728
Biotype: transcript isomorph
Gene id: XLOC_003907
Gene Name: XLOC_003907
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1030-1050
0.026
1
6mer
10-29
0.005
Not Conserved
6mer
468-487
0.004
0
ZBTB20-AS1
hsa-miR-19b-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467304
Biotype: antisense
Gene id: ENSG00000241560
Gene Name: ZBTB20-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-563
0.034
1
LINC01021
hsa-miR-19b-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505775
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
703-714
0.032
Not Conserved
6mer
413-437
0.002
0
TMEM254-AS1
hsa-miR-19b-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432070
Biotype: antisense
Gene id: ENSG00000230091
Gene Name: TMEM254-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1531-1555
0.018
0
7mer
504-524
0.010
0
6mer
2160-2183
0.003
1
6mer
309-330
0.002
0
XLOC_004147
hsa-miR-19b-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007892
Biotype: transcript isomorph
Gene id: XLOC_004147
Gene Name: XLOC_004147
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1456-1478
0.029
1
6mer
1092-1115
0.005
3
CTC-321K16.1
hsa-miR-19b-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514446
Biotype: antisense
Gene id: ENSG00000250167
Gene Name: CTC-321K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-70
0.034
6
XLOC_006110
hsa-miR-19b-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013453
Biotype: transcript isomorph
Gene id: XLOC_006110
Gene Name: XLOC_006110
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-318
0.034
1
RP11-184E9.2
hsa-miR-19b-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562632
Biotype: lincRNA
Gene id: ENSG00000260761
Gene Name: RP11-184E9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-862
0.030
1
6mer
412-431
0.004
1
RBFADN
hsa-miR-19b-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566810
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-125
0.030
2
6mer
30-50
0.004
1
XLOC_007942
hsa-miR-19b-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
274-298
0.018
1
8mer
4855-4867
0.013
1
6mer
7115-7129
0.002
0
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