LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
RP11-731J8.2
hsa-miR-19b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3019-3032
0.027
1
8mer
2409-2421
0.007
1
6mer
3663-3672
0.003
4
XLOC_012665
hsa-miR-19b-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026191
Biotype: transcript isomorph
Gene id: XLOC_012665
Gene Name: XLOC_012665
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
375-398
0.036
6
APCDD1L-AS1
hsa-miR-19b-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000448374
Biotype: lincRNA
Gene id: ENSG00000231290
Gene Name: APCDD1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-317
0.036
3
LINC01477
hsa-miR-19b-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566101
Biotype: lincRNA
Gene id: ENSG00000261715
Gene Name: LINC01477
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
375-398
0.036
6
LINC00961
hsa-miR-19b-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024283.1
Biotype: lincRNA
Gene id: NR_024283.1 (gene)
Gene Name: LINC00961
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1037-1052
0.029
1
7mer
1041-1059
0.006
2
RP11-552F3.4
hsa-miR-19b-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586808
Biotype: antisense
Gene id: ENSG00000266980
Gene Name: RP11-552F3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
208-215
0.036
1
XLOC_010109
hsa-miR-19b-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020821
Biotype: transcript isomorph
Gene id: XLOC_010109
Gene Name: XLOC_010109
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1875-1887
0.022
3
7mer
834-851
0.009
1
7mer
4516-4526
0.004
0
OR2A1-AS1
hsa-miR-19b-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000476560
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-33
0.032
Not Conserved
6mer
607-618
0.004
0
RP11-88I18.2
hsa-miR-19b-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590767
Biotype: antisense
Gene id: ENSG00000233178
Gene Name: RP11-88I18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1650-1666
0.035
5
AC133785.1
hsa-miR-19b-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446213
Biotype: antisense
Gene id: ENSG00000233221
Gene Name: AC133785.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
878-902
0.024
0
7mer
464-480
0.008
1
6mer
126-149
0.004
1
LOC101927053
hsa-miR-19b-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110209.1
Biotype: antisense
Gene id: NR_110209.1 (gene)
Gene Name: LOC101927053
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1477-1498
0.018
1
8mer
199-215
0.014
0
6mer
370-374
0.003
1
RP11-669N7.3
hsa-miR-19b-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542578
Biotype: lincRNA
Gene id: ENSG00000256699
Gene Name: RP11-669N7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1074-1094
0.035
1
AC003958.2
hsa-miR-19b-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000430006
Biotype: antisense
Gene id: ENSG00000234859
Gene Name: AC003958.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1552-1575
0.027
2
7mer
892-911
0.005
1
6mer
1579-1606
0.003
4
CPEB2-AS1
hsa-miR-19b-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501916
Biotype: lincRNA
Gene id: ENSG00000247624
Gene Name: CPEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-162
0.035
1
TMEM254-AS1
hsa-miR-19b-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448729
Biotype: antisense
Gene id: ENSG00000230091
Gene Name: TMEM254-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1546-1570
0.023
0
7mer
519-539
0.010
0
6mer
324-345
0.002
0
STAU2-AS1
hsa-miR-19b-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522703
Biotype: antisense
Gene id: ENSG00000253302
Gene Name: STAU2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-137
0.035
7
XLOC_004983
hsa-miR-19b-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010462
Biotype: transcript isomorph
Gene id: XLOC_004983
Gene Name: XLOC_004983
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
142-161
0.035
1
RP11-561E1.1
hsa-miR-19b-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519364
Biotype: antisense
Gene id: ENSG00000253643
Gene Name: RP11-561E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
830-852
0.032
1
6mer
298-321
0.003
2
RP5-963E22.5
hsa-miR-19b-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000567259
Biotype: lincRNA
Gene id: ENSG00000260416
Gene Name: RP5-963E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-99
0.022
1
6mer
1923-1939
0.006
0
6mer
336-357
0.004
1
6mer
1090-1105
0.002
0
XLOC_001376
hsa-miR-19b-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004704
Biotype: transcript isomorph
Gene id: XLOC_001376
Gene Name: XLOC_001376
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-327
0.035
1
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