LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
AC004448.5
hsa-miR-19b-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000601694
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-104
0.037
1
AC004448.5
hsa-miR-19b-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585389
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-105
0.037
1
XLOC_010998
hsa-miR-19b-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022712
Biotype: transcript isomorph
Gene id: XLOC_010998
Gene Name: XLOC_010998
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-66
0.037
1
RP11-168K9.2
hsa-miR-19b-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527317
Biotype: lincRNA
Gene id: ENSG00000255087
Gene Name: RP11-168K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-611
0.013
0
7mer
296-318
0.013
1
8mer
743-767
0.011
1
C5orf56
hsa-miR-19b-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_045116.1
Biotype: sense
Gene id: NR_045116.1 (gene)
Gene Name: C5orf56
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
718-743
0.027
0
7mer
621-640
0.008
1
6mer
429-447
0.002
0
RP4-671O14.6
hsa-miR-19b-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13775-13793
0.014
1
8mer
13132-13155
0.006
2
6mer
13439-13456
0.002
2
7mer
7959-7972
0.002
0
6mer
13619-13635
0.002
0
6mer
901-928
0.002
0
6mer
5606-5615
0.001
0
6mer
6960-6976
0.001
Not Conserved
6mer
3910-3935
0.001
0
6mer
2246-2263
0.001
0
6mer
6761-6782
0.001
Not Conserved
6mer
10191-10211
0.001
0
6mer
7044-7059
0.001
0
6mer
6978-7002
0.000
0
SIX3-AS1
hsa-miR-19b-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456467
Biotype: lincRNA
Gene id: ENSG00000236502
Gene Name: SIX3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-304
0.033
6
7mer
275-295
0.004
2
VIPR1-AS1
hsa-miR-19b-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600342
Biotype: antisense
Gene id: ENSG00000232354
Gene Name: VIPR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-335
0.037
0
TTLL10-AS1
hsa-miR-19b-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000379317
Biotype: antisense
Gene id: ENSG00000205231
Gene Name: TTLL10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3302-3322
0.003
0
6mer
3277-3297
0.003
0
6mer
3219-3239
0.002
0
6mer
3086-3106
0.002
1
6mer
3169-3189
0.002
0
6mer
3194-3214
0.002
0
6mer
3252-3277
0.002
0
6mer
3111-3136
0.002
0
6mer
3028-3045
0.002
0
6mer
2980-2998
0.002
0
6mer
2922-2942
0.002
0
6mer
2872-2892
0.002
1
6mer
2955-2975
0.002
0
6mer
3003-3028
0.002
0
6mer
2897-2917
0.002
0
6mer
3061-3081
0.002
Not Conserved
6mer
2708-2728
0.001
Not Conserved
6mer
2741-2766
0.001
0
6mer
2683-2702
0.001
Not Conserved
RP1-251I12.1
hsa-miR-19b-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502680
Biotype: lincRNA
Gene id: ENSG00000249332
Gene Name: RP1-251I12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-360
0.020
0
7mer
96-101
0.013
1
6mer
533-549
0.004
0
XLOC_012613
hsa-miR-19b-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026244
Biotype: transcript isomorph
Gene id: XLOC_012613
Gene Name: XLOC_012613
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-466
0.037
1
RP11-38F22.1
hsa-miR-19b-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548512
Biotype: lincRNA
Gene id: ENSG00000258220
Gene Name: RP11-38F22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4-11
0.036
0
TET2-AS1
hsa-miR-19b-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515414
Biotype: antisense
Gene id: ENSG00000251586
Gene Name: TET2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-13
0.036
1
RP11-545A16.1
hsa-miR-19b-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569644
Biotype: antisense
Gene id: ENSG00000261250
Gene Name: RP11-545A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-208
0.033
0
6mer
333-351
0.003
2
STAU2-AS1
hsa-miR-19b-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517604
Biotype: antisense
Gene id: ENSG00000253302
Gene Name: STAU2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-67
0.036
7
STAU2-AS1
hsa-miR-19b-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_038406.1
Biotype: antisense
Gene id: NR_038406.1 (gene)
Gene Name: STAU2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-67
0.036
7
LOC102659288
hsa-miR-19b-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110014.1
Biotype: lincRNA
Gene id: NR_110014.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1203-1218
0.036
1
LOC102659288
hsa-miR-19b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110015.1
Biotype: lincRNA
Gene id: NR_110015.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1135-1150
0.036
1
SEMA3F-AS1
hsa-miR-19b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000425674
Biotype: antisense
Gene id: ENSG00000235016
Gene Name: SEMA3F-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-380
0.036
5
APCDD1L-AS1
hsa-miR-19b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000445984
Biotype: lincRNA
Gene id: ENSG00000231290
Gene Name: APCDD1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-439
0.036
3
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