LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
RP11-461A8.1
hsa-miR-19b-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573982
Biotype: lincRNA
Gene id: ENSG00000261938
Gene Name: RP11-461A8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-30
0.038
6
RP11-650L12.2
hsa-miR-19b-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567141
Biotype: antisense
Gene id: ENSG00000261762
Gene Name: RP11-650L12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-95
0.032
3
6mer
635-655
0.004
1
6mer
935-959
0.002
2
CTA-342B11.3
hsa-miR-19b-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23934-23946
0.018
0
6mer
24295-24307
0.004
0
7mer
13913-13927
0.004
1
6mer
6351-6375
0.002
3
6mer
18848-18872
0.002
1
6mer
7058-7075
0.002
1
6mer
17898-17920
0.001
Not Conserved
6mer
15911-15932
0.001
0
6mer
22440-22461
0.001
Not Conserved
6mer
19458-19484
0.001
1
6mer
22953-22974
0.001
Not Conserved
6mer
11635-11647
0.001
Not Conserved
RP1-309F20.3
hsa-miR-19b-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441270
Biotype: antisense
Gene id: ENSG00000225806
Gene Name: RP1-309F20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-309
0.038
0
CTB-180A7.6
hsa-miR-19b-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599584
Biotype: sense_overlapping
Gene id: ENSG00000269444
Gene Name: CTB-180A7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
47-59
0.038
1
TTC21B-AS1
hsa-miR-19b-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000440322
Biotype: antisense
Gene id: ENSG00000224490
Gene Name: TTC21B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1387-1408
0.038
1
RP11-92A5.2
hsa-miR-19b-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511017
Biotype: antisense
Gene id: ENSG00000250538
Gene Name: RP11-92A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-213
0.024
4
8mer
911-924
0.014
1
MCM3AP-AS1
hsa-miR-19b-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432735
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
384-403
0.029
1
8mer
1071-1090
0.010
0
RP5-821D11.7
hsa-miR-19b-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000333487
Biotype: antisense
Gene id: ENSG00000184068
Gene Name: RP5-821D11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
680-706
0.036
1
7mer
1307-1333
0.002
0
RP11-1101K5.1
hsa-miR-19b-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524236
Biotype: lincRNA
Gene id: ENSG00000253434
Gene Name: RP11-1101K5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
172-185
0.035
0
6mer
138-161
0.003
Not Conserved
XLOC_009891
hsa-miR-19b-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020575
Biotype: transcript isomorph
Gene id: XLOC_009891
Gene Name: XLOC_009891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-97
0.038
2
XLOC_012162
hsa-miR-19b-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025103
Biotype: transcript isomorph
Gene id: XLOC_012162
Gene Name: XLOC_012162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
757-774
0.038
7
XLOC_014082
hsa-miR-19b-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029141
Biotype: transcript isomorph
Gene id: XLOC_014082
Gene Name: XLOC_014082
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1750-1772
0.014
1
8mer
1005-1028
0.012
1
7mer
2177-2191
0.006
0
6mer
658-672
0.004
0
6mer
1420-1432
0.001
1
6mer
1392-1415
0.001
2
XLOC_008878
hsa-miR-19b-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017740
Biotype: transcript isomorph
Gene id: XLOC_008878
Gene Name: XLOC_008878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-519
0.038
0
AC004448.5
hsa-miR-19b-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609249
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-83
0.038
1
XLOC_010682
hsa-miR-19b-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021677
Biotype: transcript isomorph
Gene id: XLOC_010682
Gene Name: XLOC_010682
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-411
0.033
1
6mer
235-239
0.005
1
RP11-379B18.5
hsa-miR-19b-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599176
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-50
0.017
1
7mer
94-112
0.016
1
7mer
646-661
0.004
Not Conserved
CTA-796E4.5
hsa-miR-19b-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7418-7439
0.006
1
7mer
16832-16851
0.005
2
6mer
638-663
0.003
1
7mer
11320-11346
0.003
1
6mer
20357-20367
0.002
3
6mer
11218-11241
0.002
2
6mer
14722-14746
0.002
0
6mer
4802-4814
0.002
0
6mer
4533-4544
0.002
Not Conserved
6mer
15261-15279
0.002
2
6mer
2597-2611
0.001
0
6mer
8277-8295
0.001
1
6mer
15819-15839
0.001
0
6mer
25335-25344
0.001
0
6mer
8328-8341
0.001
1
6mer
4575-4579
0.001
0
6mer
4595-4599
0.001
Not Conserved
6mer
20421-20437
0.001
Not Conserved
RP11-1399P15.1
hsa-miR-19b-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608142
Biotype: antisense
Gene id: ENSG00000273445
Gene Name: RP11-1399P15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-68
0.035
3
6mer
273-297
0.003
0
RP11-244F12.3
hsa-miR-19b-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561241
Biotype: antisense
Gene id: ENSG00000259498
Gene Name: RP11-244F12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-43
0.025
0
7mer
3258-3275
0.012
0
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