LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
RP11-403A3.3
hsa-miR-19b-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617298
Biotype: lincRNA
Gene id: ENSG00000275830
Gene Name: RP11-403A3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-51
0.032
4
7mer
519-538
0.007
0
CTA-228A9.4
hsa-miR-19b-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624072
Biotype: antisense
Gene id: ENSG00000279080
Gene Name: CTA-228A9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20368-20379
0.022
1
6mer
19940-19956
0.003
1
7mer
9543-9548
0.002
1
6mer
1916-1920
0.002
1
6mer
9803-9828
0.002
2
6mer
14081-14096
0.001
0
6mer
1565-1589
0.001
1
6mer
13121-13144
0.001
0
6mer
13888-13914
0.001
0
6mer
4626-4646
0.001
0
6mer
3158-3179
0.001
0
7mer
9824-9841
0.001
3
6mer
11541-11559
0.001
0
6mer
2063-2080
0.001
0
XLOC_012572
hsa-miR-19b-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025762
Biotype: transcript isomorph
Gene id: XLOC_012572
Gene Name: XLOC_012572
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2202-2215
0.020
1
7mer
161-186
0.010
0
7mer
1547-1564
0.004
1
7mer
1181-1186
0.004
0
6mer
2037-2047
0.002
1
XLOC_002258
hsa-miR-19b-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004374
Biotype: transcript isomorph
Gene id: XLOC_002258
Gene Name: XLOC_002258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2549-2561
0.014
Not Conserved
6mer
2611-2629
0.013
1
6mer
1102-1125
0.006
1
6mer
493-518
0.006
0
RP11-353N14.2
hsa-miR-19b-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576963
Biotype: lincRNA
Gene id: ENSG00000262772
Gene Name: RP11-353N14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1524-1550
0.004
2
6mer
1580-1590
0.004
2
6mer
1558-1572
0.003
0
6mer
1424-1444
0.003
Not Conserved
6mer
1448-1464
0.003
1
6mer
1304-1330
0.003
0
6mer
1414-1424
0.003
0
6mer
1522-1532
0.003
0
6mer
1386-1396
0.002
Not Conserved
6mer
618-622
0.002
1
6mer
1388-1410
0.002
Not Conserved
6mer
1336-1354
0.002
Not Conserved
6mer
1372-1382
0.002
Not Conserved
6mer
1358-1368
0.002
Not Conserved
6mer
1490-1500
0.002
Not Conserved
GS1-124K5.11
hsa-miR-19b-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449307
Biotype: lincRNA
Gene id: ENSG00000229180
Gene Name: GS1-124K5.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
924-949
0.014
1
7mer
6700-6727
0.011
1
6mer
232-257
0.006
1
6mer
6474-6499
0.003
1
6mer
5876-5900
0.002
1
6mer
4493-4497
0.001
0
6mer
4148-4152
0.001
0
6mer
1256-1272
0.001
0
SEMA6A-AS1
hsa-miR-19b-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507558
Biotype: antisense
Gene id: ENSG00000248445
Gene Name: SEMA6A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-98
0.039
3
FAM95B1
hsa-miR-19b-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610972
Biotype: lincRNA
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
17-39
0.011
0
6mer
447-461
0.011
0
6mer
1096-1117
0.009
0
8mer
1237-1252
0.007
Not Conserved
6mer
1037-1053
0.002
Not Conserved
AC010884.1
hsa-miR-19b-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456519
Biotype: antisense
Gene id: ENSG00000224509
Gene Name: AC010884.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-137
0.039
12
TEX26-AS1
hsa-miR-19b-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000591131
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
53-60
0.039
1
RP11-622C24.2
hsa-miR-19b-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000617013
Biotype: lincRNA
Gene id: ENSG00000277152
Gene Name: RP11-622C24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-135
0.029
1
7mer
4030-4045
0.008
4
6mer
5572-5593
0.001
0
6mer
4908-4927
0.001
1
RP11-363E7.4
hsa-miR-19b-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563205
Biotype: sense_overlapping
Gene id: ENSG00000260912
Gene Name: RP11-363E7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1725-1745
0.039
8
RP11-267L5.1
hsa-miR-19b-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520543
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
689-707
0.039
4
MCM3AP-AS1
hsa-miR-19b-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000421927
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
362-381
0.029
1
8mer
1049-1068
0.010
0
LINC00094
hsa-miR-19b-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000432807
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1169-1190
0.026
1
7mer
2020-2036
0.011
1
6mer
1383-1399
0.002
1
HOXA11-AS
hsa-miR-19b-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000522674
Biotype: antisense
Gene id: ENSG00000240990
Gene Name: HOXA11-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-459
0.027
8
8mer
311-325
0.012
1
RP11-51P8.1
hsa-miR-19b-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507344
Biotype: lincRNA
Gene id: ENSG00000251527
Gene Name: RP11-51P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-563
0.035
0
6mer
599-617
0.004
2
RP11-467L13.7
hsa-miR-19b-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619086
Biotype: antisense
Gene id: ENSG00000276900
Gene Name: RP11-467L13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1572-1590
0.035
1
6mer
324-350
0.003
2
LINC01011
hsa-miR-19b-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445000
Biotype: lincRNA
Gene id: ENSG00000244041
Gene Name: LINC01011
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1958-1976
0.029
2
7mer
2088-2107
0.010
2
LOC645513
hsa-miR-19b-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037630.1
Biotype: antisense
Gene id: NR_037630.1 (gene)
Gene Name: LOC645513
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
858-875
0.038
0
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