LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
DNM3OS
hsa-miR-19b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7551-7577
0.027
6
6mer
7684-7701
0.010
14
6mer
3567-3571
0.002
2
6mer
5612-5635
0.001
2
RP11-231G15.2
hsa-miR-19b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509496
Biotype: lincRNA
Gene id: ENSG00000251367
Gene Name: RP11-231G15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-293
0.041
1
XLOC_012623
hsa-miR-19b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026276
Biotype: transcript isomorph
Gene id: XLOC_012623
Gene Name: XLOC_012623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-268
0.041
2
RP11-156P1.3
hsa-miR-19b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575930
Biotype: lincRNA
Gene id: ENSG00000262879
Gene Name: RP11-156P1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-160
0.041
2
APCDD1L-AS1
hsa-miR-19b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000424205
Biotype: lincRNA
Gene id: ENSG00000231290
Gene Name: APCDD1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-84
0.036
3
6mer
435-459
0.004
1
RP11-506B6.6
hsa-miR-19b-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000588837
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-545
0.041
1
XLOC_011826
hsa-miR-19b-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024507
Biotype: transcript isomorph
Gene id: XLOC_011826
Gene Name: XLOC_011826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8497-8517
0.010
0
9mer
8278-8298
0.007
0
9mer
8139-8146
0.005
0
8mer
8048-8070
0.004
0
6mer
8596-8617
0.002
2
6mer
4057-4061
0.002
0
7mer
1642-1662
0.002
0
6mer
3492-3511
0.002
0
6mer
7897-7919
0.001
0
6mer
7516-7534
0.001
1
6mer
7610-7630
0.001
1
6mer
7554-7569
0.001
1
6mer
2043-2054
0.001
Not Conserved
6mer
8152-8171
0.001
0
6mer
8010-8018
0.001
0
RP11-267L5.1
hsa-miR-19b-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521523
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
710-728
0.040
4
RP11-248G5.9
hsa-miR-19b-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613982
Biotype: antisense
Gene id: ENSG00000273523
Gene Name: RP11-248G5.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
678-688
0.031
1
6mer
3322-3345
0.009
3
LOC101929657
hsa-miR-19b-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_110306.1
Biotype: antisense
Gene id: NR_110306.1 (gene)
Gene Name: LOC101929657
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
674-684
0.031
1
6mer
3318-3341
0.009
3
CBR3-AS1
hsa-miR-19b-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623638
Biotype: antisense
Gene id: ENSG00000236830
Gene Name: CBR3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
518-535
0.040
3
AC002550.5
hsa-miR-19b-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565916
Biotype: antisense
Gene id: ENSG00000261312
Gene Name: AC002550.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
352-372
0.040
1
RP11-22L13.1
hsa-miR-19b-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607061
Biotype: lincRNA
Gene id: ENSG00000272235
Gene Name: RP11-22L13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-34
0.024
1
7mer
113-127
0.012
1
7mer
983-1004
0.004
0
XLOC_011217
hsa-miR-19b-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023919
Biotype: transcript isomorph
Gene id: XLOC_011217
Gene Name: XLOC_011217
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-170
0.040
8
RP11-231I16.1
hsa-miR-19b-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548738
Biotype: antisense
Gene id: ENSG00000257279
Gene Name: RP11-231I16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3589-3600
0.025
2
7mer
1672-1692
0.006
5
6mer
1808-1831
0.004
10
6mer
1545-1568
0.003
10
6mer
2797-2814
0.002
1
XLOC_001809
hsa-miR-19b-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003987
Biotype: transcript isomorph
Gene id: XLOC_001809
Gene Name: XLOC_001809
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
741-759
0.038
1
6mer
2779-2803
0.002
1
ZNRD1-AS1
hsa-miR-19b-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9584-9603
0.032
1
6mer
1998-2020
0.004
1
7mer
2334-2356
0.004
Not Conserved
RP11-260G13.1
hsa-miR-19b-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000549515
Biotype: lincRNA
Gene id: ENSG00000258107
Gene Name: RP11-260G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-77
0.040
10
FAM95B1
hsa-miR-19b-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592053
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
16-38
0.011
0
6mer
446-460
0.011
0
6mer
1095-1116
0.009
0
8mer
1236-1251
0.007
Not Conserved
6mer
1036-1052
0.002
Not Conserved
UCA1
hsa-miR-19b-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397381
Biotype: lincRNA
Gene id: ENSG00000214049
Gene Name: UCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
148-167
0.020
1
6mer
1693-1720
0.011
1
6mer
2058-2077
0.009
0
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