LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
CTD-3220F14.3
hsa-miR-19b-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000611171
Biotype: antisense
Gene id: ENSG00000276846
Gene Name: CTD-3220F14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-117
0.034
0
6mer
335-348
0.004
0
6mer
655-677
0.004
Not Conserved
RP11-92K15.3
hsa-miR-19b-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607017
Biotype: lincRNA
Gene id: ENSG00000272264
Gene Name: RP11-92K15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-61
0.033
1
7mer
356-372
0.009
1
XIST
hsa-miR-19b-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
15140-15164
0.010
0
6mer
9252-9260
0.004
4
7mer
14509-14525
0.003
1
8mer
15083-15106
0.003
Not Conserved
6mer
18476-18494
0.003
2
6mer
11087-11108
0.003
2
6mer
11672-11685
0.002
2
6mer
11381-11394
0.002
2
6mer
11962-11983
0.002
3
6mer
13128-13152
0.002
1
6mer
12262-12283
0.002
1
6mer
12554-12575
0.002
3
6mer
12199-12211
0.001
2
6mer
11034-11046
0.001
3
6mer
11619-11633
0.001
2
6mer
11909-11921
0.001
1
6mer
11328-11349
0.001
2
RP11-156P1.3
hsa-miR-19b-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571901
Biotype: lincRNA
Gene id: ENSG00000262879
Gene Name: RP11-156P1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-253
0.038
2
6mer
369-391
0.004
1
RP11-923I11.8
hsa-miR-19b-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618634
Biotype: antisense
Gene id: ENSG00000278451
Gene Name: RP11-923I11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-374
0.042
7
LINC00368
hsa-miR-19b-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000422994
Biotype: lincRNA
Gene id: ENSG00000225870
Gene Name: LINC00368
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-65
0.042
1
RP11-603J24.5
hsa-miR-19b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549438
Biotype: antisense
Gene id: ENSG00000258317
Gene Name: RP11-603J24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-44
0.029
8
6mer
333-349
0.009
9
6mer
762-787
0.004
1
RP11-532F12.5
hsa-miR-19b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565315
Biotype: antisense
Gene id: ENSG00000261183
Gene Name: RP11-532F12.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-80
0.042
1
XLOC_011030
hsa-miR-19b-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022750
Biotype: transcript isomorph
Gene id: XLOC_011030
Gene Name: XLOC_011030
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-304
0.042
1
MCM3AP-AS1
hsa-miR-19b-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000444998
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
275-294
0.031
1
8mer
962-981
0.011
0
PLCH1-AS2
hsa-miR-19b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472913
Biotype: antisense
Gene id: ENSG00000242925
Gene Name: PLCH1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-69
0.035
2
6mer
56-81
0.006
3
FLJ45079
hsa-miR-19b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000374983
Biotype: lincRNA
Gene id: ENSG00000204283
Gene Name: FLJ45079
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3139-3163
0.006
1
7mer
3367-3394
0.005
1
9mer
3025-3051
0.004
1
9mer
2943-2957
0.004
1
9mer
3053-3076
0.004
1
6mer
979-999
0.003
1
7mer
3349-3367
0.002
1
7mer
3003-3008
0.002
1
7mer
3119-3145
0.002
0
8mer
3264-3277
0.002
0
7mer
3298-3316
0.002
1
7mer
3244-3270
0.002
1
6mer
3069-3092
0.001
2
6mer
3193-3217
0.001
3
6mer
2951-2963
0.001
0
6mer
3213-3230
0.001
1
6mer
2937-2953
0.001
1
RP11-561E1.1
hsa-miR-19b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520256
Biotype: antisense
Gene id: ENSG00000253643
Gene Name: RP11-561E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
383-405
0.041
1
RP11-664D7.4
hsa-miR-19b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000512294
Biotype: antisense
Gene id: ENSG00000248801
Gene Name: RP11-664D7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1396-1418
0.041
1
CTD-2541J13.1
hsa-miR-19b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562669
Biotype: lincRNA
Gene id: ENSG00000260578
Gene Name: CTD-2541J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1272-1283
0.034
2
6mer
578-597
0.004
1
6mer
2642-2669
0.003
1
XLOC_012981
hsa-miR-19b-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
162-181
0.020
1
6mer
2377-2404
0.012
1
6mer
2742-2761
0.009
0
RP11-700H6.1
hsa-miR-19b-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000501718
Biotype: lincRNA
Gene id: ENSG00000247011
Gene Name: RP11-700H6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1273-1297
0.028
4
6mer
1305-1332
0.005
4
6mer
415-441
0.004
2
7mer
200-223
0.004
0
RP11-267L5.1
hsa-miR-19b-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523682
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
674-692
0.041
4
CTD-2526M8.2
hsa-miR-19b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592678
Biotype: lincRNA
Gene id: ENSG00000267726
Gene Name: CTD-2526M8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-442
0.041
1
LINC00094
hsa-miR-19b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430633
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1108-1129
0.026
1
7mer
1959-1975
0.013
1
6mer
1322-1338
0.002
1
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