LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
SVIL-AS1
hsa-miR-19b-3p
0.523
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000427063
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:29422187-29422215
exon
HITS-CLIP
DIRECT
LncBasev2
TAS2R64P
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000534866
Biotype: processed_transcript
Gene id: ENSG00000256274
Gene Name: TAS2R64P
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:11078343-11078371
exon
HITS-CLIP
DIRECT
LncBasev2
THUMPD3-AS1
hsa-miR-19b-3p
0.560
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000519043
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:9385319-9385347
exon
HITS-CLIP
DIRECT
LncBasev2
TIMM8BP2
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000445940
Biotype: processed_pseudogene
Gene id: ENSG00000224908
Gene Name: TIMM8BP2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:134166735-134166763
exon
HITS-CLIP
DIRECT
LncBasev2
TPM3P9
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000424846
Biotype: processed_transcript
Gene id: ENSG00000241015
Gene Name: TPM3P9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:53442261-53442289
exon
HITS-CLIP
DIRECT
LncBasev2
TTLL7-IT1
hsa-miR-19b-3p
0.540
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000455929
Biotype: sense_intronic
Gene id: ENSG00000233061
Gene Name: TTLL7-IT1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:83980013-83980041
exon
HITS-CLIP
DIRECT
LncBasev2
TTN-AS1
hsa-miR-19b-3p
0.452
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000588257
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:178536458-178536486
exon
HITS-CLIP
DIRECT
LncBasev2
TXLNGY
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: Y
Transcript: ENST00000253320
Biotype: processed_transcript
Gene id: ENSG00000131002
Gene Name: TXLNGY
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
Y:19604274-19604302
exon
PAR-CLIP
DIRECT
LncBasev2
XIST
hsa-miR-19b-3p
0.873
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
X:73846605-73846633
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846031-73846059
exon
HITS-CLIP
DIRECT
LncBasev2
X:73842728-73842756
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851952-73851980
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846335-73846363
exon
HITS-CLIP
DIRECT
LncBasev2
X:73848560-73848588
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844858-73844899
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845386-73845414
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846605-73846633
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843698-73843726
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845386-73845414
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843698-73843726
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844511-73844539
exon
HITS-CLIP
DIRECT
LncBasev2
X:73842728-73842756
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846031-73846059
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851952-73851980
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846335-73846363
exon
HITS-CLIP
DIRECT
LncBasev2
X:73847985-73848013
exon
HITS-CLIP
DIRECT
LncBasev2
X:73847985-73848013
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845386-73845414
exon
HITS-CLIP
DIRECT
LncBasev2
X:73849013-73849041
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846605-73846633
exon
HITS-CLIP
DIRECT
LncBasev2
X:73842728-73842756
exon
HITS-CLIP
DIRECT
LncBasev2
X:73848560-73848588
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844511-73844539
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845739-73845780
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851952-73851980
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846031-73846059
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845452-73845480
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846031-73846059
exon
HITS-CLIP
DIRECT
LncBasev2
X:73848560-73848588
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845739-73845780
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844805-73844833
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845739-73845767
exon
HITS-CLIP
DIRECT
LncBasev2
X:73848401-73848429
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844564-73844605
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851952-73851980
exon
HITS-CLIP
DIRECT
LncBasev2
X:73847985-73848013
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845386-73845414
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846605-73846633
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844858-73844899
exon
HITS-CLIP
DIRECT
LncBasev2
X:73849013-73849041
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846335-73846363
exon
HITS-CLIP
DIRECT
LncBasev2
X:73829143-73829171
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844858-73844886
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843698-73843726
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844511-73844539
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845149-73845190
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845096-73845124
exon
HITS-CLIP
DIRECT
LncBasev2
X:73842728-73842756
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844057-73844085
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844577-73844605
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851952-73851980
exon
HITS-CLIP
DIRECT
LncBasev2
X:73844858-73844886
exon
HITS-CLIP
DIRECT
LncBasev2
X:73846605-73846633
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845752-73845780
exon
HITS-CLIP
DIRECT
LncBasev2
X:73845386-73845414
exon
HITS-CLIP
DIRECT
LncBasev2
Kishore S et al. 2011
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:73842728-73842756
exon
PAR-CLIP
DIRECT
LncBasev2
X:73848617-73848645
exon
PAR-CLIP
DIRECT
LncBasev2
XLOC_000508
hsa-miR-19b-3p
0.392
mTTBlnPmP
IP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001231
Biotype: transcript isomorph
Gene id: XLOC_000508
Gene Name: XLOC_000508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr1:193356012-193356040
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_000757
hsa-miR-19b-3p
0.423
mTTBlnPmP
IP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001441
Biotype: transcript isomorph
Gene id: XLOC_000757
Gene Name: XLOC_000757
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
chr1:28246436-28246464
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_000895
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001553
Biotype: transcript isomorph
Gene id: XLOC_000895
Gene Name: XLOC_000895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
chr1:84618734-84618762
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_000992
hsa-miR-19b-3p
0.549
mTTBlnPmP
IP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001651
Biotype: transcript isomorph
Gene id: XLOC_000992
Gene Name: XLOC_000992
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr1:121743040-121743068
exon
PAR-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr1:121743040-121743068
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr1:121743040-121743068
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_001854
hsa-miR-19b-3p
0.648
mTTBlnPmP
IP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004015
Biotype: transcript isomorph
Gene id: XLOC_001854
Gene Name: XLOC_001854
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr2:216219665-216219693
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr2:216218542-216218570
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_002263
hsa-miR-19b-3p
0.503
mTTBlnPmP
IP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003368
Biotype: transcript isomorph
Gene id: XLOC_002263
Gene Name: XLOC_002263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
chr2:110211571-110211599
exon
HITS-CLIP
DIRECT
LncBasev2
chr2:110211571-110211599
exon
HITS-CLIP
DIRECT
LncBasev2
chr2:110211571-110211599
exon
HITS-CLIP
DIRECT
LncBasev2
chr2:110211571-110211599
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_003234
hsa-miR-19b-3p
0.621
mTTBlnPmP
IP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006633
Biotype: transcript isomorph
Gene id: XLOC_003234
Gene Name: XLOC_003234
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
chr3:126266653-126266681
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_005053
hsa-miR-19b-3p
0.464
mTTBlnPmP
IP

Gene Details
Chromosome: chr5
Transcript: TCONS_00011070
Biotype: transcript isomorph
Gene id: XLOC_005053
Gene Name: XLOC_005053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
chr5:151174722-151174750
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_005067
hsa-miR-19b-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010539
Biotype: transcript isomorph
Gene id: XLOC_005067
Gene Name: XLOC_005067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr5:161910499-161910527
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_005278
hsa-miR-19b-3p
0.408
mTTBlnPmP
IP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011803
Biotype: transcript isomorph
Gene id: XLOC_005278
Gene Name: XLOC_005278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
chr6:37541171-37541199
exon
HITS-CLIP
DIRECT
LncBasev2
XLOC_005587
hsa-miR-19b-3p
0.406
mTTBlnPmP
IP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012055
Biotype: transcript isomorph
Gene id: XLOC_005587
Gene Name: XLOC_005587
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr6:4017525-4017553
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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