LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
C1orf213
hsa-miR-199a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000335648
Biotype: antisense
Gene id: ENSG00000249087
Gene Name: C1orf213
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2309-2332
0.012
1
7mer
519-540
0.005
1
6mer
2399-2425
0.004
1
6mer
2140-2160
0.003
4
6mer
1724-1739
0.002
2
XLOC_013174
hsa-miR-199a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027635
Biotype: transcript isomorph
Gene id: XLOC_013174
Gene Name: XLOC_013174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-78
0.025
0
XLOC_000516
hsa-miR-199a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001234
Biotype: transcript isomorph
Gene id: XLOC_000516
Gene Name: XLOC_000516
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Prostate Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-97
0.025
1
RP11-566H8.2
hsa-miR-199a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522611
Biotype: retained_intron
Gene id: ENSG00000254095
Gene Name: RP11-566H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
403-430
0.025
0
BTBD9-AS1
hsa-miR-199a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412822
Biotype: antisense
Gene id: ENSG00000226533
Gene Name: BTBD9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-275
0.025
3
TSIX
hsa-miR-199a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24939-24957
0.005
1
8mer
28017-28023
0.002
0
6mer
27940-27945
0.002
0
6mer
20461-20487
0.002
1
6mer
19718-19739
0.002
1
6mer
7604-7628
0.002
0
6mer
26989-27015
0.001
1
6mer
21041-21057
0.001
1
6mer
29919-29940
0.001
2
6mer
25958-25985
0.001
1
7mer
19760-19783
0.001
1
6mer
6303-6324
0.001
1
6mer
14389-14402
0.001
Not Conserved
6mer
13580-13604
0.001
Not Conserved
6mer
9691-9715
0.001
0
6mer
13674-13697
0.001
Not Conserved
6mer
14489-14505
0.001
Not Conserved
XLOC_007323
hsa-miR-199a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015946
Biotype: transcript isomorph
Gene id: XLOC_007323
Gene Name: XLOC_007323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
861-876
0.016
0
9mer
489-512
0.007
Not Conserved
6mer
300-321
0.002
Not Conserved
XLOC_006072
hsa-miR-199a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014121
Biotype: transcript isomorph
Gene id: XLOC_006072
Gene Name: XLOC_006072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-191
0.006
1
6mer
614-625
0.005
2
6mer
377-386
0.004
1
7mer
380-401
0.004
1
7mer
397-418
0.003
1
6mer
1262-1287
0.002
0
RP11-164J13.1
hsa-miR-199a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000483208
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2959-2984
0.018
0
6mer
406-423
0.005
7
6mer
2742-2763
0.002
Not Conserved
MTUS2-AS2
hsa-miR-199a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000417624
Biotype: antisense
Gene id: ENSG00000236758
Gene Name: MTUS2-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
430-444
0.022
0
6mer
185-207
0.003
0
RP5-940J5.6
hsa-miR-199a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501075
Biotype: antisense
Gene id: ENSG00000247853
Gene Name: RP5-940J5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-119
0.017
8
6mer
2092-2110
0.005
1
6mer
364-381
0.003
3
KRTAP5-AS1
hsa-miR-199a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000424148
Biotype: antisense
Gene id: ENSG00000233930
Gene Name: KRTAP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2139-2160
0.015
Not Conserved
7mer
793-812
0.007
1
6mer
965-990
0.002
1
AC019118.3
hsa-miR-199a-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425776
Biotype: lincRNA
Gene id: ENSG00000236760
Gene Name: AC019118.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
539-561
0.019
2
7mer
166-187
0.005
1
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