LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
XXbac-B135H6.18
hsa-miR-199a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610278
Biotype: lincRNA
Gene id: ENSG00000272829
Gene Name: XXbac-B135H6.18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-28
0.025
1
LINC00854
hsa-miR-199a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000598128
Biotype: antisense
Gene id: ENSG00000236383
Gene Name: LINC00854
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
186-198
0.025
1
LINC00854
hsa-miR-199a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000599491
Biotype: antisense
Gene id: ENSG00000236383
Gene Name: LINC00854
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
186-198
0.025
1
NPHP3-ACAD11
hsa-miR-199a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6854-6868
0.008
13
7mer
5903-5925
0.005
4
6mer
1159-1177
0.004
10
6mer
7453-7472
0.003
2
6mer
4485-4502
0.002
4
6mer
807-830
0.002
0
6mer
1005-1032
0.001
2
LINC00854
hsa-miR-199a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000598934
Biotype: antisense
Gene id: ENSG00000236383
Gene Name: LINC00854
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
185-197
0.025
1
CCDC26
hsa-miR-199a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523151
Biotype: lincRNA
Gene id: ENSG00000229140
Gene Name: CCDC26
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1239-1262
0.020
3
6mer
1020-1031
0.005
1
RP4-794I6.4
hsa-miR-199a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000621919
Biotype: lincRNA
Gene id: ENSG00000277287
Gene Name: RP4-794I6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5209-5215
0.011
0
7mer
5108-5131
0.005
1
7mer
4040-4064
0.004
1
7mer
1480-1506
0.002
1
6mer
4739-4761
0.002
1
6mer
4254-4280
0.001
1
6mer
1577-1596
0.001
1
AC009506.1
hsa-miR-199a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418474
Biotype: antisense
Gene id: ENSG00000224152
Gene Name: AC009506.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
585-603
0.025
1
RP11-139H15.6
hsa-miR-199a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000618841
Biotype: sense_intronic
Gene id: ENSG00000277548
Gene Name: RP11-139H15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-14
0.025
1
XLOC_009645
hsa-miR-199a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020306
Biotype: transcript isomorph
Gene id: XLOC_009645
Gene Name: XLOC_009645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1577-1602
0.021
0
6mer
338-360
0.002
Not Conserved
6mer
831-853
0.001
Not Conserved
6mer
684-706
0.001
Not Conserved
LINC00854
hsa-miR-199a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000598568
Biotype: antisense
Gene id: ENSG00000236383
Gene Name: LINC00854
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
192-204
0.025
1
XLOC_013563
hsa-miR-199a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028217
Biotype: transcript isomorph
Gene id: XLOC_013563
Gene Name: XLOC_013563
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-139
0.025
1
RP11-33H15.1
hsa-miR-199a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000624629
Biotype: lincRNA
Gene id: ENSG00000279750
Gene Name: RP11-33H15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-287
0.025
0
AC073043.1
hsa-miR-199a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608419
Biotype: lincRNA
Gene id: ENSG00000232732
Gene Name: AC073043.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-37
0.025
1
XLOC_004980
hsa-miR-199a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009772
Biotype: transcript isomorph
Gene id: XLOC_004980
Gene Name: XLOC_004980
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-201
0.025
0
XLOC_004539
hsa-miR-199a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010082
Biotype: transcript isomorph
Gene id: XLOC_004539
Gene Name: XLOC_004539
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
796-816
0.016
1
6mer
202-221
0.004
1
6mer
589-614
0.003
Not Conserved
6mer
624-642
0.002
2
RP11-955H22.1
hsa-miR-199a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536330
Biotype: lincRNA
Gene id: ENSG00000256292
Gene Name: RP11-955H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-137
0.025
1
XLOC_012724
hsa-miR-199a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026372
Biotype: transcript isomorph
Gene id: XLOC_012724
Gene Name: XLOC_012724
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1789-1804
0.021
1
6mer
787-812
0.004
1
RP11-267N12.1
hsa-miR-199a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415437
Biotype: antisense
Gene id: ENSG00000232892
Gene Name: RP11-267N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
498-509
0.015
2
6mer
2513-2517
0.007
3
6mer
2119-2128
0.003
1
LINC00992
hsa-miR-199a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504107
Biotype: lincRNA
Gene id: ENSG00000248663
Gene Name: LINC00992
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-464
0.025
1
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