LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-199a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-147C23.1
hsa-miR-199a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413825
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
378-397
0.026
1
AC144525.1
hsa-miR-199a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441444
Biotype: lincRNA
Gene id: ENSG00000226992
Gene Name: AC144525.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
200-227
0.026
1
LINC01138
hsa-miR-199a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000622328
Biotype: lincRNA
Gene id: ENSG00000274020
Gene Name: LINC01138
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-431
0.020
0
7mer
1765-1791
0.003
0
6mer
1793-1813
0.003
1
CTA-280A3.2
hsa-miR-199a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
9481-9496
0.005
1
7mer
779-794
0.005
1
6mer
9114-9132
0.003
0
7mer
4743-4762
0.002
0
8mer+wobble
6539-6557
0.002
1
6mer
7431-7446
0.001
Not Conserved
6mer
8296-8315
0.001
1
6mer
1299-1307
0.001
0
6mer
6875-6901
0.001
1
7mer
6679-6697
0.001
1
6mer
6196-6219
0.001
0
6mer
5879-5892
0.001
0
6mer
8340-8359
0.001
0
RP11-65M17.3
hsa-miR-199a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528496
Biotype: lincRNA
Gene id: ENSG00000254968
Gene Name: RP11-65M17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-365
0.026
0
RP11-217C7.1
hsa-miR-199a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514134
Biotype: lincRNA
Gene id: ENSG00000249675
Gene Name: RP11-217C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-505
0.026
0
XLOC_009474
hsa-miR-199a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6728-6754
0.005
3
8mer
1519-1542
0.004
2
7mer
1787-1806
0.004
4
6mer
5937-5947
0.004
8
6mer
3148-3153
0.003
4
6mer
2759-2781
0.003
5
6mer
1599-1604
0.002
4
6mer
5807-5829
0.002
7
EVX1-AS
hsa-miR-199a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000519218
Biotype: antisense
Gene id: ENSG00000253405
Gene Name: EVX1-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
326-343
0.025
3
RP11-420J11.2
hsa-miR-199a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488262
Biotype: lincRNA
Gene id: ENSG00000241696
Gene Name: RP11-420J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
604-614
0.025
0
RP11-20D14.6
hsa-miR-199a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000514568
Biotype: lincRNA
Gene id: ENSG00000249790
Gene Name: RP11-20D14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1799-1824
0.022
0
6mer
560-582
0.002
Not Conserved
6mer
1053-1075
0.001
Not Conserved
6mer
906-928
0.001
Not Conserved
CTC-340A15.2
hsa-miR-199a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000517508
Biotype: antisense
Gene id: ENSG00000241956
Gene Name: CTC-340A15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-401
0.016
0
6mer
28-49
0.006
6
6mer
690-703
0.003
Not Conserved
KIF9-AS1
hsa-miR-199a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000429315
Biotype: antisense
Gene id: ENSG00000227398
Gene Name: KIF9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
245-260
0.006
0
8mer
1619-1636
0.006
1
7mer
3843-3864
0.005
3
8mer
1245-1261
0.005
1
7mer
2279-2302
0.002
1
6mer
3860-3883
0.001
1
XLOC_007308
hsa-miR-199a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015940
Biotype: transcript isomorph
Gene id: XLOC_007308
Gene Name: XLOC_007308
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-258
0.016
1
8mer
36-51
0.009
0
LINC00645
hsa-miR-199a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557399
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
381-405
0.025
0
AC013401.2
hsa-miR-199a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422017
Biotype: lincRNA
Gene id: ENSG00000232227
Gene Name: AC013401.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-385
0.025
1
LOC101928882
hsa-miR-199a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_109986.1
Biotype: sense
Gene id: NR_109986.1 (gene)
Gene Name: LOC101928882
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
439-458
0.015
3
8mer
1213-1234
0.008
1
6mer
885-904
0.002
0
XLOC_002186
hsa-miR-199a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004321
Biotype: transcript isomorph
Gene id: XLOC_002186
Gene Name: XLOC_002186
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2027-2039
0.018
1
6mer
1959-1979
0.005
3
6mer
867-886
0.002
1
LINC00854
hsa-miR-199a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000594691
Biotype: antisense
Gene id: ENSG00000236383
Gene Name: LINC00854
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
187-199
0.025
1
LINC00854
hsa-miR-199a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000597948
Biotype: antisense
Gene id: ENSG00000236383
Gene Name: LINC00854
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
186-198
0.025
1
XLOC_012997
hsa-miR-199a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
592-613
0.019
0
6mer
875-896
0.006
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept