LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
RP11-889D3.2
hsa-miR-199a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496829
Biotype: lincRNA
Gene id: ENSG00000243572
Gene Name: RP11-889D3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-467
0.026
0
C14orf64
hsa-miR-199a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556462
Biotype: lincRNA
Gene id: ENSG00000246223
Gene Name: C14orf64
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-458
0.021
0
6mer
1786-1801
0.003
1
6mer
968-985
0.003
3
XLOC_011325
hsa-miR-199a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023477
Biotype: transcript isomorph
Gene id: XLOC_011325
Gene Name: XLOC_011325
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-241
0.026
1
LINC00944
hsa-miR-199a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_033878.1
Biotype: lincRNA
Gene id: NR_033878.1 (gene)
Gene Name: LINC00944
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-189
0.026
1
XLOC_010561
hsa-miR-199a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021965
Biotype: transcript isomorph
Gene id: XLOC_010561
Gene Name: XLOC_010561
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
369-375
0.011
3
6mer
40-58
0.004
1
6mer
1204-1219
0.004
0
6mer
73-88
0.004
0
6mer
601-619
0.002
2
6mer
918-936
0.002
0
RP11-360F5.1
hsa-miR-199a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509449
Biotype: antisense
Gene id: ENSG00000249207
Gene Name: RP11-360F5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
820-835
0.026
2
CTD-2331C18.5
hsa-miR-199a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000537594
Biotype: processed_transcript
Gene id: ENSG00000256220
Gene Name: CTD-2331C18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-211
0.021
2
6mer
208-225
0.005
5
RP11-15H20.6
hsa-miR-199a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397094
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1488-1504
0.015
1
6mer
1924-1935
0.006
0
6mer
918-929
0.005
0
RP11-21L23.2
hsa-miR-199a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000566747
Biotype: sense_overlapping
Gene id: ENSG00000261578
Gene Name: RP11-21L23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
476-503
0.018
1
7mer
4154-4163
0.006
Not Conserved
6mer
1460-1478
0.002
1
RP11-315D16.4
hsa-miR-199a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612894
Biotype: lincRNA
Gene id: ENSG00000260657
Gene Name: RP11-315D16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-102
0.026
1
SRP14-AS1
hsa-miR-199a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000504245
Biotype: lincRNA
Gene id: ENSG00000248508
Gene Name: SRP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
953-964
0.015
2
6mer
324-342
0.005
3
7mer
1035-1040
0.003
1
6mer
554-580
0.003
2
XLOC_007148
hsa-miR-199a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015083
Biotype: transcript isomorph
Gene id: XLOC_007148
Gene Name: XLOC_007148
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-99
0.026
1
XLOC_009180
hsa-miR-199a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019149
Biotype: transcript isomorph
Gene id: XLOC_009180
Gene Name: XLOC_009180
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-81
0.012
2
7mer
1234-1256
0.006
1
7mer
1041-1053
0.004
Not Conserved
6mer
2794-2818
0.003
1
TUG1
hsa-miR-199a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000519077
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-542
0.012
1
6mer
3039-3061
0.005
7
6mer
628-642
0.004
4
6mer
1189-1210
0.003
5
6mer
2362-2386
0.002
3
LINC00426
hsa-miR-199a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000450327
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
374-399
0.026
0
PRKXP1
hsa-miR-199a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602585
Biotype: lincRNA
Gene id: ENSG00000270127
Gene Name: PRKXP1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-152
0.016
1
9mer
475-485
0.007
0
6mer
359-374
0.002
0
XLOC_011378
hsa-miR-199a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023545
Biotype: transcript isomorph
Gene id: XLOC_011378
Gene Name: XLOC_011378
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-459
0.026
Not Conserved
FLJ45079
hsa-miR-199a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000374983
Biotype: lincRNA
Gene id: ENSG00000204283
Gene Name: FLJ45079
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4039-4060
0.008
0
6mer
112-127
0.005
0
7mer
4589-4615
0.004
1
6mer
409-431
0.003
0
6mer
2834-2848
0.002
2
6mer
4633-4644
0.002
Not Conserved
7mer
2205-2225
0.002
1
7mer
2674-2699
0.001
0
XLOC_005602
hsa-miR-199a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011130
Biotype: transcript isomorph
Gene id: XLOC_005602
Gene Name: XLOC_005602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
956-978
0.013
0
9mer
2137-2159
0.004
0
6mer
697-722
0.003
1
6mer
597-622
0.003
0
6mer
2382-2403
0.002
1
6mer
2223-2246
0.001
0
RP11-147C23.1
hsa-miR-199a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595188
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-354
0.026
1
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