LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
RP4-761J14.8
hsa-miR-199a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000396799
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1150-1175
0.021
9
7mer
730-752
0.005
4
RP11-81H3.2
hsa-miR-199a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548427
Biotype: lincRNA
Gene id: ENSG00000251138
Gene Name: RP11-81H3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-510
0.026
1
AC006262.4
hsa-miR-199a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599127
Biotype: lincRNA
Gene id: ENSG00000269729
Gene Name: AC006262.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-365
0.019
0
7mer
113-140
0.008
0
LINC01471
hsa-miR-199a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000461398
Biotype: lincRNA
Gene id: ENSG00000239921
Gene Name: LINC01471
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2753-2778
0.009
Not Conserved
7mer
2533-2538
0.005
1
7mer
970-993
0.003
0
7mer
732-756
0.003
0
6mer
365-381
0.003
Not Conserved
6mer
1250-1275
0.002
1
6mer
1679-1694
0.002
2
6mer
1144-1167
0.001
0
GS1-24F4.2
hsa-miR-199a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000531701
Biotype: lincRNA
Gene id: ENSG00000245857
Gene Name: GS1-24F4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-310
0.026
0
XLOC_001415
hsa-miR-199a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004742
Biotype: transcript isomorph
Gene id: XLOC_001415
Gene Name: XLOC_001415
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
508-533
0.013
1
6mer
70-81
0.004
1
7mer
1440-1463
0.004
0
6mer
235-260
0.003
0
6mer
232-249
0.003
1
XLOC_009037
hsa-miR-199a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019831
Biotype: transcript isomorph
Gene id: XLOC_009037
Gene Name: XLOC_009037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-183
0.013
4
8mer
351-364
0.011
1
6mer
42-63
0.003
0
RP11-356J5.12
hsa-miR-199a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000504610
Biotype: lincRNA
Gene id: ENSG00000250303
Gene Name: RP11-356J5.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1535-1554
0.019
1
7mer
309-329
0.006
0
6mer
1318-1333
0.001
Not Conserved
RP11-67L3.4
hsa-miR-199a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455380
Biotype: antisense
Gene id: ENSG00000233203
Gene Name: RP11-67L3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
381-398
0.019
2
6mer
267-288
0.008
3
RP11-618M23.2
hsa-miR-199a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519185
Biotype: lincRNA
Gene id: ENSG00000254201
Gene Name: RP11-618M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-96
0.026
0
XLOC_013278
hsa-miR-199a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1329-1355
0.026
0
RP11-264B17.3
hsa-miR-199a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569969
Biotype: retained_intron
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-686
0.013
8
7mer
895-919
0.007
11
6mer
2020-2046
0.003
13
6mer
3087-3113
0.001
2
7mer
2249-2269
0.001
2
6mer
1919-1933
0.001
0
RP11-420J11.2
hsa-miR-199a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000464537
Biotype: lincRNA
Gene id: ENSG00000241696
Gene Name: RP11-420J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-279
0.026
0
AC003003.5
hsa-miR-199a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000468219
Biotype: sense_intronic
Gene id: ENSG00000188477
Gene Name: AC003003.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
345-355
0.013
10
7mer
68-87
0.006
0
6mer
118-134
0.003
0
6mer
1329-1347
0.002
0
6mer
779-796
0.002
2
RP11-67L3.4
hsa-miR-199a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433690
Biotype: antisense
Gene id: ENSG00000233203
Gene Name: RP11-67L3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-286
0.020
2
6mer
155-176
0.006
3
LINC01505
hsa-miR-199a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444985
Biotype: lincRNA
Gene id: ENSG00000234229
Gene Name: LINC01505
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
67-77
0.022
12
6mer
394-403
0.004
1
AC013401.2
hsa-miR-199a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433550
Biotype: lincRNA
Gene id: ENSG00000232227
Gene Name: AC013401.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-385
0.026
1
CTC-546K23.1
hsa-miR-199a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000433406
Biotype: lincRNA
Gene id: ENSG00000229855
Gene Name: CTC-546K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-193
0.022
1
6mer
733-753
0.004
1
RP11-101E7.2
hsa-miR-199a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568410
Biotype: antisense
Gene id: ENSG00000260277
Gene Name: RP11-101E7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-216
0.021
0
6mer
87-108
0.005
2
AP006621.5
hsa-miR-199a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530083
Biotype: lincRNA
Gene id: ENSG00000255284
Gene Name: AP006621.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
592-616
0.026
1
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