LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_011157
hsa-miR-199a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023287
Biotype: transcript isomorph
Gene id: XLOC_011157
Gene Name: XLOC_011157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2778-2792
0.010
0
6mer
157-181
0.005
0
6mer
646-665
0.003
0
6mer
1189-1213
0.002
0
6mer
2050-2068
0.002
0
6mer
734-757
0.002
0
6mer
2550-2558
0.002
Not Conserved
6mer
1714-1739
0.001
Not Conserved
RP11-171I2.1
hsa-miR-199a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3404-3426
0.024
1
6mer
2079-2092
0.003
4
RP11-442N1.1
hsa-miR-199a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000506934
Biotype: lincRNA
Gene id: ENSG00000250543
Gene Name: RP11-442N1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
487-506
0.027
0
RP11-226P1.2
hsa-miR-199a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556819
Biotype: lincRNA
Gene id: ENSG00000258718
Gene Name: RP11-226P1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-366
0.027
1
AC114776.3
hsa-miR-199a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3446-3471
0.007
1
6mer
1223-1236
0.006
1
6mer
3178-3201
0.005
1
6mer
3111-3123
0.005
1
6mer
3434-3460
0.003
1
AC073254.1
hsa-miR-199a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604677
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-207
0.009
1
6mer
185-199
0.007
1
6mer
410-426
0.006
1
6mer
357-379
0.004
1
RP11-66B24.4
hsa-miR-199a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560068
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1111-1132
0.025
2
6mer
662-686
0.001
1
C14orf182
hsa-miR-199a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000530176
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-113
0.008
1
7mer
1378-1401
0.006
1
6mer
206-228
0.003
1
6mer
354-370
0.003
1
6mer
1899-1913
0.002
1
6mer
325-349
0.002
1
6mer
312-328
0.002
Not Conserved
XLOC_000543
hsa-miR-199a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001255
Biotype: transcript isomorph
Gene id: XLOC_000543
Gene Name: XLOC_000543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1214-1238
0.021
Not Conserved
6mer
216-234
0.006
2
LINC00293
hsa-miR-199a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518962
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-430
0.027
1
AC007365.1
hsa-miR-199a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445738
Biotype: lincRNA
Gene id: ENSG00000233694
Gene Name: AC007365.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-413
0.027
1
TRAF3IP2-AS1
hsa-miR-199a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000531702
Biotype: antisense
Gene id: ENSG00000255389
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2049-2055
0.020
1
7mer
2153-2173
0.007
1
RP4-683M8.2
hsa-miR-199a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439795
Biotype: lincRNA
Gene id: ENSG00000226133
Gene Name: RP4-683M8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
711-733
0.027
5
AC006115.3
hsa-miR-199a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595954
Biotype: antisense
Gene id: ENSG00000269793
Gene Name: AC006115.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
535-553
0.016
0
8mer
1896-1921
0.007
0
6mer
1577-1594
0.003
0
RP11-712P20.2
hsa-miR-199a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000593078
Biotype: sense_intronic
Gene id: ENSG00000266965
Gene Name: RP11-712P20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1208-1223
0.015
2
7mer
1411-1433
0.012
0
XLOC_004699
hsa-miR-199a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010231
Biotype: transcript isomorph
Gene id: XLOC_004699
Gene Name: XLOC_004699
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-102
0.027
1
RP11-586K12.10
hsa-miR-199a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
602-614
0.015
0
6mer
760-780
0.012
0
ITGA9-AS1
hsa-miR-199a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000614028
Biotype: antisense
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-467
0.027
0
RP5-1165K10.2
hsa-miR-199a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454572
Biotype: processed_transcript
Gene id: ENSG00000273432
Gene Name: RP5-1165K10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1912-1933
0.019
2
6mer
1534-1553
0.005
7
6mer
1327-1345
0.002
0
XLOC_004361
hsa-miR-199a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009933
Biotype: transcript isomorph
Gene id: XLOC_004361
Gene Name: XLOC_004361
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
483-502
0.011
1
6mer
1059-1086
0.008
0
6mer
304-324
0.004
0
6mer
633-659
0.003
0
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