LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
AP000265.1
hsa-miR-199a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000565959
Biotype: lincRNA
Gene id: ENSG00000261610
Gene Name: AP000265.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-65
0.014
0
7mer
344-369
0.013
2
GLIDR
hsa-miR-199a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_015363.1
Biotype: lincRNA
Gene id: NR_015363.1 (gene)
Gene Name: GLIDR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2528-2541
0.014
1
6mer
2521-2541
0.013
1
RP11-401P9.6
hsa-miR-199a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000379963
Biotype: antisense
Gene id: ENSG00000205414
Gene Name: RP11-401P9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-374
0.022
1
7mer
1983-2002
0.005
Not Conserved
RP4-761J14.8
hsa-miR-199a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000589924
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
408-433
0.027
9
LINC01278
hsa-miR-199a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000610088
Biotype: sense_overlapping
Gene id: ENSG00000235437
Gene Name: LINC01278
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-62
0.027
1
OGFRP1
hsa-miR-199a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415205
Biotype: lincRNA
Gene id: ENSG00000182057
Gene Name: OGFRP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
384-402
0.027
1
LINC01206
hsa-miR-199a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482787
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2736-2751
0.006
0
7mer
4237-4258
0.006
1
6mer
7115-7119
0.004
6
6mer
55-77
0.004
1
6mer
240-257
0.004
0
6mer
7727-7743
0.003
5
6mer
5991-6005
0.001
1
TTTY22
hsa-miR-199a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000445253
Biotype: lincRNA
Gene id: ENSG00000224075
Gene Name: TTTY22
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
390-406
0.027
Not Conserved
RP11-654D12.2
hsa-miR-199a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547370
Biotype: lincRNA
Gene id: ENSG00000258216
Gene Name: RP11-654D12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-217
0.024
2
6mer
392-410
0.003
2
RP5-1051D14.1
hsa-miR-199a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453569
Biotype: lincRNA
Gene id: ENSG00000236950
Gene Name: RP5-1051D14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
474-494
0.027
4
CH507-216K13.2
hsa-miR-199a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623370
Biotype: lincRNA
Gene id: ENSG00000279851
Gene Name: CH507-216K13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1611-1634
0.005
Not Conserved
6mer
203-221
0.005
0
6mer
1807-1830
0.004
0
7mer
471-494
0.003
0
7mer
1227-1243
0.003
0
6mer
1191-1215
0.003
0
6mer
333-350
0.002
0
6mer
1589-1599
0.001
Not Conserved
6mer
1244-1268
0.001
0
XLOC_005140
hsa-miR-199a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011658
Biotype: transcript isomorph
Gene id: XLOC_005140
Gene Name: XLOC_005140
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-84
0.027
1
FLJ22763
hsa-miR-199a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000619765
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-125
0.016
3
6mer
74-86
0.011
5
LINC00645
hsa-miR-199a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557359
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
353-377
0.027
0
RP11-266O8.1
hsa-miR-199a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000543286
Biotype: lincRNA
Gene id: ENSG00000257060
Gene Name: RP11-266O8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
167-185
0.022
1
6mer
1450-1467
0.004
3
LINC00477
hsa-miR-199a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000483544
Biotype: lincRNA
Gene id: ENSG00000197503
Gene Name: LINC00477
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-315
0.027
1
RP11-65L3.2
hsa-miR-199a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603415
Biotype: antisense
Gene id: ENSG00000270277
Gene Name: RP11-65L3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-209
0.024
4
6mer
1272-1294
0.003
2
C4B-AS1
hsa-miR-199a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415626
Biotype: antisense
Gene id: ENSG00000229776
Gene Name: C4B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-282
0.013
2
7mer
1423-1443
0.012
5
6mer
1013-1029
0.002
0
LUCAT1
hsa-miR-199a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513626
Biotype: lincRNA
Gene id: ENSG00000248323
Gene Name: LUCAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
582-599
0.012
3
7mer
991-1014
0.010
1
6mer
1248-1271
0.005
6
RP11-145G20.1
hsa-miR-199a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513393
Biotype: lincRNA
Gene id: ENSG00000248510
Gene Name: RP11-145G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-115
0.027
1
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