LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
TMCC1-AS1
hsa-miR-199a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000605830
Biotype: antisense
Gene id: ENSG00000271270
Gene Name: TMCC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2774-2794
0.015
0
7mer
39-66
0.009
1
6mer
2919-2941
0.003
0
6mer
1714-1730
0.002
0
XLOC_012681
hsa-miR-199a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026334
Biotype: transcript isomorph
Gene id: XLOC_012681
Gene Name: XLOC_012681
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
356-368
0.028
1
ROR1-AS1
hsa-miR-199a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424995
Biotype: antisense
Gene id: ENSG00000223949
Gene Name: ROR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2089-2111
0.028
1
TTC28-AS1
hsa-miR-199a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000540665
Biotype: processed_transcript
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
594-618
0.020
1
7mer
734-760
0.006
2
6mer
427-448
0.002
1
LOC100506472
hsa-miR-199a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_040535.1
Biotype: sense
Gene id: NR_040535.1 (gene)
Gene Name: LOC100506472
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3068-3091
0.012
1
8mer
3352-3375
0.006
0
6mer
136-155
0.004
0
8mer
2133-2154
0.003
1
6mer
3110-3136
0.002
0
6mer
1993-2015
0.001
1
RP11-57A1.1
hsa-miR-199a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577281
Biotype: lincRNA
Gene id: ENSG00000263680
Gene Name: RP11-57A1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
555-578
0.028
1
TNRC6C-AS1
hsa-miR-199a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589217
Biotype: antisense
Gene id: ENSG00000204282
Gene Name: TNRC6C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1962-1983
0.015
0
8mer
1553-1571
0.006
1
6mer
3127-3144
0.003
Not Conserved
6mer
2395-2418
0.002
1
6mer
1382-1393
0.001
1
RP11-46E17.8
hsa-miR-199a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624632
Biotype: lincRNA
Gene id: ENSG00000280391
Gene Name: RP11-46E17.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9179-9197
0.019
1
8mer
5948-5968
0.007
1
6mer
1223-1245
0.002
1
TNRC6C-AS1
hsa-miR-199a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_040071.1
Biotype: sense
Gene id: NR_040071.1 (gene)
Gene Name: TNRC6C-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1959-1980
0.015
0
8mer
1550-1568
0.006
1
6mer
3124-3141
0.003
Not Conserved
6mer
2392-2415
0.002
1
6mer
1379-1390
0.001
1
XLOC_003177
hsa-miR-199a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006553
Biotype: transcript isomorph
Gene id: XLOC_003177
Gene Name: XLOC_003177
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-591
0.028
0
XLOC_003100
hsa-miR-199a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006498
Biotype: transcript isomorph
Gene id: XLOC_003100
Gene Name: XLOC_003100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4477-4501
0.021
1
6mer
801-815
0.002
0
8mer
3462-3489
0.002
0
6mer
3277-3292
0.002
0
LINC00854
hsa-miR-199a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000594857
Biotype: retained_intron
Gene id: ENSG00000236383
Gene Name: LINC00854
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
84-96
0.027
1
AP001610.9
hsa-miR-199a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000415820
Biotype: lincRNA
Gene id: ENSG00000232806
Gene Name: AP001610.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-233
0.027
2
RP11-566H8.2
hsa-miR-199a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524017
Biotype: lincRNA
Gene id: ENSG00000254095
Gene Name: RP11-566H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
784-811
0.027
0
CTD-2542L18.1
hsa-miR-199a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567093
Biotype: lincRNA
Gene id: ENSG00000260417
Gene Name: CTD-2542L18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3238-3252
0.027
Not Conserved
CHRM3-AS2
hsa-miR-199a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427859
Biotype: antisense
Gene id: ENSG00000233355
Gene Name: CHRM3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2000-2010
0.017
0
7mer
2403-2423
0.010
0
CTD-2243E23.1
hsa-miR-199a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553348
Biotype: antisense
Gene id: ENSG00000258829
Gene Name: CTD-2243E23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-434
0.027
1
CTD-2243E23.1
hsa-miR-199a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556145
Biotype: antisense
Gene id: ENSG00000258829
Gene Name: CTD-2243E23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-427
0.027
1
XLOC_007690
hsa-miR-199a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2927-2940
0.014
1
6mer
2920-2940
0.013
1
CTA-342B11.3
hsa-miR-199a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5058-5076
0.007
1
7mer
8891-8897
0.003
0
6mer
3314-3341
0.003
5
6mer
675-699
0.002
2
6mer
7257-7281
0.002
3
6mer
12379-12393
0.002
1
6mer
13741-13767
0.002
1
6mer
4906-4927
0.002
1
6mer
3082-3103
0.001
1
6mer
6701-6716
0.001
0
6mer
3775-3801
0.001
0
6mer
1442-1462
0.001
1
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