LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012720
hsa-miR-199a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026369
Biotype: transcript isomorph
Gene id: XLOC_012720
Gene Name: XLOC_012720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4749-4766
0.012
0
6mer
40-64
0.004
1
6mer
115-139
0.004
0
6mer
152-177
0.003
0
7mer
2110-2135
0.002
1
6mer
928-938
0.002
1
7mer
1786-1804
0.001
0
KIF9-AS1
hsa-miR-199a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_033373.1
Biotype: antisense
Gene id: NR_033373.1 (gene)
Gene Name: KIF9-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1746-1763
0.011
1
7mer
2406-2429
0.006
1
6mer
372-387
0.006
0
8mer
1372-1388
0.005
1
RP11-366H4.1
hsa-miR-199a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502419
Biotype: lincRNA
Gene id: ENSG00000248370
Gene Name: RP11-366H4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-67
0.028
1
XLOC_006901
hsa-miR-199a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014831
Biotype: transcript isomorph
Gene id: XLOC_006901
Gene Name: XLOC_006901
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-71
0.028
0
RFX3-AS1
hsa-miR-199a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427722
Biotype: lincRNA
Gene id: ENSG00000232104
Gene Name: RFX3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-398
0.028
1
RP5-1142A6.9
hsa-miR-199a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564984
Biotype: antisense
Gene id: ENSG00000260121
Gene Name: RP5-1142A6.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1719-1746
0.017
1
7mer
72-90
0.008
1
6mer
779-797
0.003
1
RP11-475D12.2
hsa-miR-199a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000435367
Biotype: lincRNA
Gene id: ENSG00000224504
Gene Name: RP11-475D12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2225-2248
0.008
1
7mer
1552-1566
0.006
2
6mer
2366-2392
0.006
3
8mer
900-907
0.005
1
6mer
762-771
0.002
0
6mer
987-1009
0.002
0
LINC00426
hsa-miR-199a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000447147
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1422-1447
0.024
0
6mer
254-267
0.004
2
AC097495.3
hsa-miR-199a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415448
Biotype: lincRNA
Gene id: ENSG00000228329
Gene Name: AC097495.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
839-847
0.021
1
7mer
110-128
0.007
0
CTD-2525I3.5
hsa-miR-199a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594865
Biotype: antisense
Gene id: ENSG00000269102
Gene Name: CTD-2525I3.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-321
0.028
2
RP11-335K5.2
hsa-miR-199a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559120
Biotype: antisense
Gene id: ENSG00000259555
Gene Name: RP11-335K5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
908-924
0.016
1
7mer
35-59
0.008
1
7mer
737-762
0.004
0
RP11-18B16.2
hsa-miR-199a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428292
Biotype: lincRNA
Gene id: ENSG00000227482
Gene Name: RP11-18B16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1110-1136
0.016
0
8mer
181-202
0.012
Not Conserved
RP5-1160K1.8
hsa-miR-199a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000526411
Biotype: antisense
Gene id: ENSG00000254942
Gene Name: RP5-1160K1.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-318
0.020
5
8mer
333-354
0.005
2
6mer
359-383
0.003
2
RP11-111F5.4
hsa-miR-199a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430302
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
717-730
0.015
0
6mer
710-730
0.013
0
RP11-151N17.1
hsa-miR-199a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558006
Biotype: sense_intronic
Gene id: ENSG00000259659
Gene Name: RP11-151N17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-97
0.028
1
XLOC_012893
hsa-miR-199a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026574
Biotype: transcript isomorph
Gene id: XLOC_012893
Gene Name: XLOC_012893
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-565
0.013
0
6mer
720-737
0.004
3
6mer
414-436
0.003
1
6mer
820-841
0.003
0
6mer
1130-1154
0.003
1
6mer
940-962
0.003
0
RP11-758M4.4
hsa-miR-199a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518128
Biotype: antisense
Gene id: ENSG00000253706
Gene Name: RP11-758M4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-566
0.020
2
6mer
579-602
0.005
2
6mer
951-960
0.003
1
RP11-529K1.2
hsa-miR-199a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570278
Biotype: retained_intron
Gene id: ENSG00000261777
Gene Name: RP11-529K1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-84
0.028
0
XLOC_011223
hsa-miR-199a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023377
Biotype: transcript isomorph
Gene id: XLOC_011223
Gene Name: XLOC_011223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-47
0.016
9
7mer
2613-2637
0.004
1
6mer
126-143
0.003
5
6mer
845-869
0.003
6
7mer
1121-1143
0.002
Not Conserved
AC096669.1
hsa-miR-199a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422203
Biotype: lincRNA
Gene id: ENSG00000225588
Gene Name: AC096669.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
578-600
0.028
2
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