LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
MEIS1-AS3
hsa-miR-199a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454167
Biotype: antisense
Gene id: ENSG00000226819
Gene Name: MEIS1-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-415
0.029
0
XLOC_000133
hsa-miR-199a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001982
Biotype: transcript isomorph
Gene id: XLOC_000133
Gene Name: XLOC_000133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1079-1092
0.026
2
6mer
773-793
0.002
0
RP11-2O17.2
hsa-miR-199a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109910.1
Biotype: antisense
Gene id: NR_109910.1 (gene)
Gene Name: RP11-2O17.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1166-1192
0.029
1
CTD-2516F10.2
hsa-miR-199a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000504206
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
460-476
0.020
3
6mer
3359-3368
0.003
1
7mer
1124-1138
0.003
1
6mer
2260-2281
0.001
2
6mer
3317-3342
0.001
1
RP5-837I24.2
hsa-miR-199a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443939
Biotype: antisense
Gene id: ENSG00000234953
Gene Name: RP5-837I24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-555
0.018
0
7mer
74-96
0.010
1
RP11-61F12.1
hsa-miR-199a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564809
Biotype: antisense
Gene id: ENSG00000261471
Gene Name: RP11-61F12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
761-769
0.012
2
8mer
1263-1276
0.009
0
8mer
1081-1104
0.004
0
6mer
2161-2185
0.003
1
6mer
1728-1747
0.002
1
CTA-221G9.11
hsa-miR-199a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
231-246
0.017
0
6mer
101-127
0.012
0
XLOC_005421
hsa-miR-199a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011186
Biotype: transcript isomorph
Gene id: XLOC_005421
Gene Name: XLOC_005421
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-303
0.010
1
7mer
2737-2760
0.009
1
7mer
263-282
0.008
2
6mer
115-136
0.001
0
ADAMTS9-AS1
hsa-miR-199a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000480831
Biotype: antisense
Gene id: ENSG00000241158
Gene Name: ADAMTS9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
695-706
0.028
2
RP11-116D2.1
hsa-miR-199a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567376
Biotype: lincRNA
Gene id: ENSG00000261012
Gene Name: RP11-116D2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
882-898
0.028
1
HCG25
hsa-miR-199a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422366
Biotype: antisense
Gene id: ENSG00000232940
Gene Name: HCG25
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-211
0.028
2
RP11-372K14.2
hsa-miR-199a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000603472
Biotype: antisense
Gene id: ENSG00000270681
Gene Name: RP11-372K14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-698
0.028
3
XLOC_004924
hsa-miR-199a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4234-4246
0.008
3
7mer
9244-9267
0.007
1
7mer
8835-8852
0.006
3
6mer
9501-9524
0.004
6
8mer
7466-7482
0.003
Not Conserved
6mer
5737-5762
0.001
0
CTD-2017D11.1
hsa-miR-199a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594934
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
466-489
0.011
1
6mer
1208-1235
0.009
1
6mer
917-941
0.008
1
RP5-1014D13.2
hsa-miR-199a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
607-628
0.010
2
7mer
18469-18480
0.007
2
7mer
13690-13711
0.002
0
6mer
5019-5039
0.002
1
6mer
13154-13173
0.002
0
6mer
16320-16342
0.001
0
7mer
15457-15469
0.001
0
6mer
14657-14669
0.001
0
7mer
13976-13995
0.001
1
6mer
16766-16787
0.001
1
FLJ22763
hsa-miR-199a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000616779
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-125
0.017
3
6mer
74-86
0.008
5
6mer
219-235
0.003
0
RP5-857K21.1
hsa-miR-199a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417636
Biotype: lincRNA
Gene id: ENSG00000231709
Gene Name: RP5-857K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-370
0.028
0
LINC00426
hsa-miR-199a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444319
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
94-119
0.028
0
CTD-2547L16.1
hsa-miR-199a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499554
Biotype: antisense
Gene id: ENSG00000245281
Gene Name: CTD-2547L16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-255
0.013
2
7mer
1031-1050
0.009
1
6mer
894-916
0.004
0
6mer
497-522
0.002
0
HCG25
hsa-miR-199a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000427196
Biotype: antisense
Gene id: ENSG00000232940
Gene Name: HCG25
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-192
0.028
2
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