LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-199a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
AC092669.3
hsa-miR-199a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428647
Biotype: lincRNA
Gene id: ENSG00000232164
Gene Name: AC092669.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
21-43
0.028
0
6mer
1077-1091
0.001
Not Conserved
6mer
835-857
0.001
Not Conserved
XLOC_009898
hsa-miR-199a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020584
Biotype: transcript isomorph
Gene id: XLOC_009898
Gene Name: XLOC_009898
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-137
0.025
4
6mer
835-850
0.003
4
6mer
691-703
0.002
0
AC013472.3
hsa-miR-199a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000411685
Biotype: antisense
Gene id: ENSG00000205500
Gene Name: AC013472.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-60
0.022
1
6mer
109-135
0.005
4
6mer
181-202
0.003
Not Conserved
RP11-138I1.4
hsa-miR-199a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583934
Biotype: antisense
Gene id: ENSG00000265401
Gene Name: RP11-138I1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-61
0.013
10
7mer
268-289
0.011
9
7mer
416-436
0.006
1
XLOC_012006
hsa-miR-199a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024726
Biotype: transcript isomorph
Gene id: XLOC_012006
Gene Name: XLOC_012006
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
982-998
0.030
1
TMEM108-AS1
hsa-miR-199a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000505721
Biotype: antisense
Gene id: ENSG00000251011
Gene Name: TMEM108-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
918-937
0.023
1
6mer
2085-2109
0.005
4
6mer
1401-1409
0.002
1
C4A-AS1
hsa-miR-199a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458633
Biotype: antisense
Gene id: ENSG00000233627
Gene Name: C4A-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1423-1443
0.018
7
8mer
258-282
0.011
1
6mer
1013-1029
0.002
0
LL22NC03-22D1.1
hsa-miR-199a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14384-14400
0.014
0
8mer
11224-11251
0.005
2
7mer
16966-16980
0.003
1
6mer
17781-17805
0.002
1
6mer
27705-27726
0.002
1
7mer
17057-17075
0.001
3
6mer
11635-11649
0.001
Not Conserved
6mer
20365-20387
0.001
0
6mer
2521-2546
0.001
1
CTD-2619J13.19
hsa-miR-199a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595059
Biotype: lincRNA
Gene id: ENSG00000269473
Gene Name: CTD-2619J13.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4918-4929
0.018
3
7mer
5066-5087
0.008
2
6mer
5318-5344
0.003
Not Conserved
6mer
2902-2912
0.001
0
6mer
1586-1611
0.001
1
LINC00347
hsa-miR-199a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000600832
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
660-683
0.030
1
RP11-284J1.1
hsa-miR-199a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606622
Biotype: lincRNA
Gene id: ENSG00000272485
Gene Name: RP11-284J1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
493-513
0.014
0
7mer
2082-2102
0.007
0
6mer
2013-2036
0.006
6
7mer
1019-1030
0.003
1
RP11-478H13.1
hsa-miR-199a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456082
Biotype: lincRNA
Gene id: ENSG00000236716
Gene Name: RP11-478H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-243
0.030
1
RP11-34F20.7
hsa-miR-199a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618151
Biotype: sense_intronic
Gene id: ENSG00000274270
Gene Name: RP11-34F20.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2456-2471
0.022
3
6mer
314-321
0.004
0
6mer
835-851
0.002
2
7mer
1052-1073
0.002
2
RP11-415J8.3
hsa-miR-199a-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587696
Biotype: antisense
Gene id: ENSG00000225313
Gene Name: RP11-415J8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1101-1112
0.018
1
7mer
82-107
0.007
1
6mer
776-798
0.003
2
6mer
120-146
0.002
1
RP11-267M23.3
hsa-miR-199a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521010
Biotype: antisense
Gene id: ENSG00000254315
Gene Name: RP11-267M23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-158
0.030
2
XLOC_014197
hsa-miR-199a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029335
Biotype: transcript isomorph
Gene id: XLOC_014197
Gene Name: XLOC_014197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4968-4982
0.008
1
6mer
5222-5243
0.006
1
7mer
1946-1967
0.006
2
6mer
4749-4775
0.004
1
7mer
2870-2888
0.003
0
6mer
3167-3183
0.002
1
6mer
2639-2659
0.001
2
AC074391.1
hsa-miR-199a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606978
Biotype: lincRNA
Gene id: ENSG00000204929
Gene Name: AC074391.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
679-703
0.025
1
6mer
825-848
0.005
5
RP11-480C16.1
hsa-miR-199a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608834
Biotype: lincRNA
Gene id: ENSG00000272563
Gene Name: RP11-480C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-568
0.024
0
6mer
341-362
0.006
0
RP11-624M8.1
hsa-miR-199a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606001
Biotype: antisense
Gene id: ENSG00000237742
Gene Name: RP11-624M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2094-2113
0.018
1
7mer
128-149
0.012
1
PRNCR1
hsa-miR-199a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_109833.1
Biotype: lincRNA
Gene id: NR_109833.1 (gene)
Gene Name: PRNCR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-153
0.015
1
8mer
8307-8328
0.006
1
7mer
2781-2805
0.003
3
6mer
2569-2594
0.002
1
6mer
4975-4990
0.001
1
6mer
6474-6493
0.001
0
6mer
7114-7137
0.001
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept