LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
LINC00907
hsa-miR-199a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591381
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
466-485
0.031
1
AC012613.2
hsa-miR-199a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523176
Biotype: antisense
Gene id: ENSG00000253406
Gene Name: AC012613.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-195
0.020
1
8mer
3180-3205
0.009
1
6mer
162-186
0.002
1
6mer
2193-2213
0.001
0
KCNQ5-IT1
hsa-miR-199a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445310
Biotype: sense_intronic
Gene id: ENSG00000233844
Gene Name: KCNQ5-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-559
0.027
1
6mer
339-357
0.004
0
XLOC_000633
hsa-miR-199a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001335
Biotype: transcript isomorph
Gene id: XLOC_000633
Gene Name: XLOC_000633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-98
0.027
1
7mer
4381-4403
0.003
3
6mer
4482-4506
0.001
2
TAPT1-AS1
hsa-miR-199a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000570786
Biotype: antisense
Gene id: ENSG00000263327
Gene Name: TAPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1242-1262
0.025
1
6mer
1730-1750
0.006
4
AC007161.5
hsa-miR-199a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000418534
Biotype: lincRNA
Gene id: ENSG00000234718
Gene Name: AC007161.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-287
0.031
1
RP11-24P14.1
hsa-miR-199a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446693
Biotype: lincRNA
Gene id: ENSG00000233047
Gene Name: RP11-24P14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
162-189
0.031
1
LINC00680
hsa-miR-199a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418765
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1302-1322
0.028
1
6mer
1064-1087
0.003
0
RP11-98D18.17
hsa-miR-199a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000601909
Biotype: lincRNA
Gene id: ENSG00000269489
Gene Name: RP11-98D18.17
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
413-430
0.031
1
AC097468.4
hsa-miR-199a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441450
Biotype: antisense
Gene id: ENSG00000224090
Gene Name: AC097468.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1803-1823
0.031
0
ITGA9-AS1
hsa-miR-199a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000366441
Biotype: antisense
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-485
0.031
0
LINC00907
hsa-miR-199a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_046455.1
Biotype: lincRNA
Gene id: NR_046455.1 (gene)
Gene Name: LINC00907
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
481-500
0.031
1
PAQR9-AS1
hsa-miR-199a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493825
Biotype: antisense
Gene id: ENSG00000241570
Gene Name: PAQR9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-227
0.031
0
C21orf67
hsa-miR-199a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000330551
Biotype: lincRNA
Gene id: ENSG00000183250
Gene Name: C21orf67
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-606
0.031
1
AC156455.1
hsa-miR-199a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000423999
Biotype: lincRNA
Gene id: ENSG00000256546
Gene Name: AC156455.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-208
0.015
1
7mer
413-439
0.009
2
7mer
400-420
0.007
2
LINC00907
hsa-miR-199a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585627
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
483-502
0.031
1
XLOC_005160
hsa-miR-199a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011687
Biotype: transcript isomorph
Gene id: XLOC_005160
Gene Name: XLOC_005160
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5029-5050
0.031
0
RP11-131L23.1
hsa-miR-199a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426125
Biotype: antisense
Gene id: ENSG00000223653
Gene Name: RP11-131L23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-160
0.031
2
LINC01123
hsa-miR-199a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000336905
Biotype: lincRNA
Gene id: ENSG00000204588
Gene Name: LINC01123
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
464-479
0.021
0
7mer
791-805
0.005
1
6mer
1715-1735
0.004
1
XLOC_007166
hsa-miR-199a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015109
Biotype: transcript isomorph
Gene id: XLOC_007166
Gene Name: XLOC_007166
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-93
0.021
1
7mer
2813-2831
0.005
0
7mer
3717-3739
0.002
1
6mer
3614-3631
0.002
1
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