LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
FGF13-AS1
hsa-miR-199a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000438238
Biotype: antisense
Gene id: ENSG00000226031
Gene Name: FGF13-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
481-498
0.032
5
SLC7A11-AS1
hsa-miR-199a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510066
Biotype: antisense
Gene id: ENSG00000250033
Gene Name: SLC7A11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
461-466
0.024
8
7mer
53-73
0.008
1
RP11-53B2.2
hsa-miR-199a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587344
Biotype: sense_intronic
Gene id: ENSG00000267702
Gene Name: RP11-53B2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-267
0.029
0
7mer
3112-3125
0.003
Not Conserved
RP11-673E1.4
hsa-miR-199a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506982
Biotype: antisense
Gene id: ENSG00000248828
Gene Name: RP11-673E1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-512
0.032
1
XX-C2158C6.1
hsa-miR-199a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426839
Biotype: lincRNA
Gene id: ENSG00000230423
Gene Name: XX-C2158C6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-160
0.032
1
AC073254.1
hsa-miR-199a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597193
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
623-643
0.012
0
7mer
259-269
0.007
1
6mer
247-261
0.005
1
6mer
472-488
0.005
1
6mer
419-441
0.003
1
XLOC_006867
hsa-miR-199a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014791
Biotype: transcript isomorph
Gene id: XLOC_006867
Gene Name: XLOC_006867
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1226-1246
0.026
1
6mer
2220-2235
0.006
0
XLOC_003347
hsa-miR-199a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006719
Biotype: transcript isomorph
Gene id: XLOC_003347
Gene Name: XLOC_003347
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-418
0.026
0
6mer
261-279
0.005
2
XLOC_003640
hsa-miR-199a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008192
Biotype: transcript isomorph
Gene id: XLOC_003640
Gene Name: XLOC_003640
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
821-833
0.032
1
RP11-434I12.2
hsa-miR-199a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514599
Biotype: antisense
Gene id: ENSG00000250295
Gene Name: RP11-434I12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
392-418
0.016
4
7mer
2846-2861
0.008
1
7mer
2464-2487
0.007
2
AC079630.2
hsa-miR-199a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000417422
Biotype: lincRNA
Gene id: ENSG00000223914
Gene Name: AC079630.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
181-199
0.031
0
LINC00680
hsa-miR-199a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450081
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1257-1277
0.028
1
6mer
1064-1087
0.003
0
FLG-AS1
hsa-miR-199a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000382265
Biotype: antisense
Gene id: ENSG00000237975
Gene Name: FLG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-64
0.020
1
7mer
875-892
0.005
0
7mer
1228-1243
0.004
0
6mer
503-515
0.002
0
XLOC_011448
hsa-miR-199a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4133-4144
0.011
4
8mer
8176-8198
0.010
4
8mer
4048-4062
0.005
0
6mer
6783-6799
0.002
0
6mer
3129-3153
0.002
5
6mer
1891-1907
0.002
1
7mer
975-992
0.001
0
RP11-708B6.2
hsa-miR-199a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532992
Biotype: antisense
Gene id: ENSG00000255028
Gene Name: RP11-708B6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
356-379
0.031
0
CTA-929C8.9
hsa-miR-199a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16457-16470
0.009
0
7mer
10165-10190
0.003
0
6mer
24608-24620
0.002
1
6mer
4880-4901
0.002
1
6mer
12012-12031
0.002
1
6mer
22626-22643
0.002
1
8mer
4911-4938
0.002
1
6mer
22400-22408
0.002
1
6mer
1276-1292
0.002
0
6mer
19704-19726
0.001
0
6mer
1535-1545
0.001
0
6mer
5256-5282
0.001
2
6mer
12528-12553
0.001
0
6mer
20300-20315
0.001
0
6mer
17891-17912
0.001
1
HCG25
hsa-miR-199a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442228
Biotype: antisense
Gene id: ENSG00000232940
Gene Name: HCG25
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-369
0.031
2
RP11-506N2.1
hsa-miR-199a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513551
Biotype: lincRNA
Gene id: ENSG00000251339
Gene Name: RP11-506N2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-298
0.031
1
AC091962.3
hsa-miR-199a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509568
Biotype: lincRNA
Gene id: ENSG00000251183
Gene Name: AC091962.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-374
0.022
1
6mer
116-142
0.010
1
RP11-678G14.4
hsa-miR-199a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594927
Biotype: lincRNA
Gene id: ENSG00000268240
Gene Name: RP11-678G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-358
0.018
0
6mer
356-382
0.007
0
6mer
2162-2186
0.004
0
6mer
1282-1303
0.002
0
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