LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000403
hsa-miR-199a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001146
Biotype: transcript isomorph
Gene id: XLOC_000403
Gene Name: XLOC_000403
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-200
0.023
0
6mer
1912-1928
0.005
0
6mer
1160-1181
0.003
3
6mer
1247-1272
0.002
1
LINC00839
hsa-miR-199a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429940
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
119-145
0.013
1
6mer
1342-1358
0.008
1
7mer
1473-1486
0.006
0
7mer
618-635
0.005
Not Conserved
AL133247.2
hsa-miR-199a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435713
Biotype: antisense
Gene id: ENSG00000228563
Gene Name: AL133247.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
603-609
0.033
0
LINC01233
hsa-miR-199a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598832
Biotype: lincRNA
Gene id: ENSG00000269364
Gene Name: LINC01233
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-428
0.033
Not Conserved
RP1-27K12.2
hsa-miR-199a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000506206
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-40
0.029
0
6mer
217-232
0.004
2
LINC01005
hsa-miR-199a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451440
Biotype: antisense
Gene id: ENSG00000228564
Gene Name: LINC01005
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
249-272
0.014
1
6mer
179-204
0.012
1
6mer
287-311
0.007
0
XLOC_006468
hsa-miR-199a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012911
Biotype: transcript isomorph
Gene id: XLOC_006468
Gene Name: XLOC_006468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3062-3088
0.012
1
6mer
3232-3248
0.009
1
6mer
2951-2974
0.005
1
6mer
2989-3013
0.004
0
6mer
2881-2906
0.004
1
LCMT1-AS2
hsa-miR-199a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2268-2277
0.022
1
6mer
1323-1349
0.006
1
6mer
466-486
0.005
0
AP006621.5
hsa-miR-199a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525941
Biotype: lincRNA
Gene id: ENSG00000255284
Gene Name: AP006621.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-344
0.032
1
ZNF625-ZNF20
hsa-miR-199a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037802.1
Biotype: sense
Gene id: NR_037802.1 (gene)
Gene Name: ZNF625-ZNF20
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2452-2465
0.005
1
7mer
1582-1594
0.005
3
7mer
1333-1345
0.004
3
7mer
2002-2022
0.003
1
7mer
1414-1426
0.003
3
7mer
2170-2185
0.003
0
7mer
1834-1854
0.003
3
7mer
1498-1517
0.003
2
7mer
1918-1942
0.002
1
LINC00645
hsa-miR-199a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555350
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
306-330
0.032
0
XLOC_005592
hsa-miR-199a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011439
Biotype: transcript isomorph
Gene id: XLOC_005592
Gene Name: XLOC_005592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6299-6324
0.013
1
7mer
858-867
0.009
1
7mer
4510-4533
0.005
1
8mer
2651-2672
0.003
0
6mer
1944-1961
0.002
1
RP11-661D19.3
hsa-miR-199a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000559675
Biotype: lincRNA
Gene id: ENSG00000259508
Gene Name: RP11-661D19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-195
0.032
1
FGF13-AS1
hsa-miR-199a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_038405.1
Biotype: antisense
Gene id: NR_038405.1 (gene)
Gene Name: FGF13-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
481-498
0.032
5
RP1-178F10.3
hsa-miR-199a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000623730
Biotype: TEC
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
54-75
0.032
1
RP11-193H5.1
hsa-miR-199a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450451
Biotype: antisense
Gene id: ENSG00000237250
Gene Name: RP11-193H5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-173
0.011
2
7mer
12-33
0.010
2
8mer
2668-2687
0.009
0
6mer
1849-1872
0.002
6
RP11-463J10.2
hsa-miR-199a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556834
Biotype: antisense
Gene id: ENSG00000258928
Gene Name: RP11-463J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-331
0.032
1
XLOC_008259
hsa-miR-199a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017102
Biotype: transcript isomorph
Gene id: XLOC_008259
Gene Name: XLOC_008259
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
780-799
0.020
1
7mer
213-233
0.012
0
RP11-508N22.12
hsa-miR-199a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6683-6709
0.012
1
6mer
5952-5975
0.006
1
8mer
5153-5175
0.005
0
6mer
12-35
0.004
0
6mer
5418-5440
0.003
1
6mer
3414-3438
0.002
0
RP11-264M12.2
hsa-miR-199a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563690
Biotype: antisense
Gene id: ENSG00000261707
Gene Name: RP11-264M12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
707-731
0.032
Not Conserved
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