LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_003228
hsa-miR-199a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007245
Biotype: transcript isomorph
Gene id: XLOC_003228
Gene Name: XLOC_003228
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-74
0.029
1
6mer
2335-2353
0.003
1
7mer
1402-1419
0.001
Not Conserved
XLOC_010251
hsa-miR-199a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020985
Biotype: transcript isomorph
Gene id: XLOC_010251
Gene Name: XLOC_010251
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-315
0.033
1
LINC01301
hsa-miR-199a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000531654
Biotype: lincRNA
Gene id: ENSG00000251396
Gene Name: LINC01301
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
503-520
0.033
6
XLOC_002301
hsa-miR-199a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005244
Biotype: transcript isomorph
Gene id: XLOC_002301
Gene Name: XLOC_002301
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
124-131
0.033
5
RP5-1056H1.2
hsa-miR-199a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000619370
Biotype: lincRNA
Gene id: ENSG00000278192
Gene Name: RP5-1056H1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
473-490
0.024
0
7mer
1342-1363
0.006
0
6mer
1576-1594
0.003
0
AC012501.2
hsa-miR-199a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424322
Biotype: sense_overlapping
Gene id: ENSG00000227400
Gene Name: AC012501.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-44
0.014
1
8mer
417-439
0.013
0
7mer
535-559
0.006
0
AC007365.1
hsa-miR-199a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417695
Biotype: lincRNA
Gene id: ENSG00000233694
Gene Name: AC007365.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-266
0.033
1
RP1-151F17.2
hsa-miR-199a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606924
Biotype: lincRNA
Gene id: ENSG00000272341
Gene Name: RP1-151F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-170
0.022
2
7mer
1997-2018
0.006
3
6mer
373-398
0.003
0
6mer
831-848
0.001
0
RP11-278A23.1
hsa-miR-199a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000538868
Biotype: lincRNA
Gene id: ENSG00000226180
Gene Name: RP11-278A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-207
0.016
1
7mer
156-173
0.015
1
6mer
1195-1217
0.002
0
XLOC_011745
hsa-miR-199a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024428
Biotype: transcript isomorph
Gene id: XLOC_011745
Gene Name: XLOC_011745
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-456
0.033
1
LINC01533
hsa-miR-199a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588694
Biotype: lincRNA
Gene id: ENSG00000267779
Gene Name: LINC01533
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
371-394
0.033
10
XLOC_010987
hsa-miR-199a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022407
Biotype: transcript isomorph
Gene id: XLOC_010987
Gene Name: XLOC_010987
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-486
0.033
1
LINC01233
hsa-miR-199a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594200
Biotype: lincRNA
Gene id: ENSG00000269364
Gene Name: LINC01233
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-322
0.033
Not Conserved
CTD-2251F13.1
hsa-miR-199a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000508469
Biotype: lincRNA
Gene id: ENSG00000248975
Gene Name: CTD-2251F13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-487
0.033
1
RP4-800J21.3
hsa-miR-199a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000417346
Biotype: antisense
Gene id: ENSG00000218018
Gene Name: RP4-800J21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-250
0.031
0
6mer
1480-1496
0.002
1
XLOC_014255
hsa-miR-199a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029603
Biotype: transcript isomorph
Gene id: XLOC_014255
Gene Name: XLOC_014255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-318
0.029
1
8mer
433-447
0.004
1
RP11-65M17.3
hsa-miR-199a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529238
Biotype: lincRNA
Gene id: ENSG00000254968
Gene Name: RP11-65M17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-469
0.033
0
PAQR9-AS1
hsa-miR-199a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000478823
Biotype: antisense
Gene id: ENSG00000241570
Gene Name: PAQR9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-482
0.033
0
XLOC_006263
hsa-miR-199a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014220
Biotype: transcript isomorph
Gene id: XLOC_006263
Gene Name: XLOC_006263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-450
0.033
0
HCG25
hsa-miR-199a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450514
Biotype: antisense
Gene id: ENSG00000232940
Gene Name: HCG25
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-254
0.033
2
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