LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
RFX3-AS1
hsa-miR-199a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457566
Biotype: lincRNA
Gene id: ENSG00000232104
Gene Name: RFX3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-477
0.035
1
LINC00680
hsa-miR-199a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2153-2177
0.018
0
6mer
1936-1957
0.009
0
6mer
1055-1078
0.007
0
PAQR9-AS1
hsa-miR-199a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607937
Biotype: antisense
Gene id: ENSG00000241570
Gene Name: PAQR9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-403
0.034
0
RP11-573D15.3
hsa-miR-199a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000434957
Biotype: antisense
Gene id: ENSG00000231724
Gene Name: RP11-573D15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-370
0.018
Not Conserved
8mer
400-419
0.017
1
RP4-580N22.2
hsa-miR-199a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443207
Biotype: lincRNA
Gene id: ENSG00000229291
Gene Name: RP4-580N22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-49
0.034
Not Conserved
XLOC_003449
hsa-miR-199a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007979
Biotype: transcript isomorph
Gene id: XLOC_003449
Gene Name: XLOC_003449
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-463
0.029
2
7mer
1487-1502
0.006
Not Conserved
RP11-488I20.3
hsa-miR-199a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561756
Biotype: lincRNA
Gene id: ENSG00000259841
Gene Name: RP11-488I20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-104
0.022
1
7mer
407-432
0.006
0
6mer
112-125
0.006
0
CTD-2647L4.4
hsa-miR-199a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560865
Biotype: sense_intronic
Gene id: ENSG00000259366
Gene Name: CTD-2647L4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-518
0.034
0
RP11-58O15.1
hsa-miR-199a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472243
Biotype: lincRNA
Gene id: ENSG00000240777
Gene Name: RP11-58O15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-217
0.034
0
PAQR9-AS1
hsa-miR-199a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608686
Biotype: antisense
Gene id: ENSG00000241570
Gene Name: PAQR9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-342
0.034
0
RP11-423G4.10
hsa-miR-199a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000612818
Biotype: sense_intronic
Gene id: ENSG00000274598
Gene Name: RP11-423G4.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-608
0.034
0
XLOC_012733
hsa-miR-199a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026382
Biotype: transcript isomorph
Gene id: XLOC_012733
Gene Name: XLOC_012733
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2789-2810
0.028
1
7mer
362-387
0.006
Not Conserved
CERS6-AS1
hsa-miR-199a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000600693
Biotype: antisense
Gene id: ENSG00000227617
Gene Name: CERS6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-541
0.034
1
LOC401557
hsa-miR-199a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_046107.1
Biotype: lincRNA
Gene id: NR_046107.1 (gene)
Gene Name: LOC401557
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-50
0.028
0
6mer
198-218
0.003
0
6mer
2198-2221
0.001
1
6mer
1637-1659
0.001
1
7mer
1709-1724
0.001
1
LINC00839
hsa-miR-199a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
34-60
0.015
1
6mer
1341-1357
0.008
1
7mer
1472-1485
0.006
0
7mer
617-634
0.005
Not Conserved
XLOC_004419
hsa-miR-199a-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010710
Biotype: transcript isomorph
Gene id: XLOC_004419
Gene Name: XLOC_004419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1034-1041
0.018
0
6mer
1595-1608
0.007
0
6mer
1451-1476
0.006
0
6mer
875-892
0.003
0
RP11-776A13.3
hsa-miR-199a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551287
Biotype: lincRNA
Gene id: ENSG00000257756
Gene Name: RP11-776A13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
499-522
0.019
1
6mer
216-232
0.014
1
XLOC_007214
hsa-miR-199a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015168
Biotype: transcript isomorph
Gene id: XLOC_007214
Gene Name: XLOC_007214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-49
0.022
3
7mer
2393-2412
0.010
2
6mer
815-841
0.002
0
LINC01029
hsa-miR-199a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583106
Biotype: lincRNA
Gene id: ENSG00000265843
Gene Name: LINC01029
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
781-798
0.025
1
7mer
1290-1301
0.009
0
XLOC_010009
hsa-miR-199a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020710
Biotype: transcript isomorph
Gene id: XLOC_010009
Gene Name: XLOC_010009
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
272-295
0.020
1
6mer
9-29
0.013
0
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