LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004622
hsa-miR-199a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010156
Biotype: transcript isomorph
Gene id: XLOC_004622
Gene Name: XLOC_004622
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-265
0.025
1
7mer
100-121
0.011
1
LINC00662
hsa-miR-199a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586954
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1086-1110
0.036
0
AC079776.1
hsa-miR-199a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450531
Biotype: lincRNA
Gene id: ENSG00000229536
Gene Name: AC079776.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
49-74
0.036
0
LINC00907
hsa-miR-199a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585639
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
625-644
0.036
1
RP11-989E6.10
hsa-miR-199a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568752
Biotype: lincRNA
Gene id: ENSG00000261200
Gene Name: RP11-989E6.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2312-2335
0.014
0
7mer
1040-1064
0.005
0
7mer
1407-1424
0.005
0
7mer
1180-1193
0.004
0
6mer
3157-3182
0.004
0
6mer
3832-3848
0.002
Not Conserved
6mer
1726-1750
0.002
0
LOC100129316
hsa-miR-199a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_033912.1
Biotype: lincRNA
Gene id: NR_033912.1 (gene)
Gene Name: LOC100129316
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3931-3946
0.011
1
8mer
4512-4530
0.009
1
7mer
880-905
0.006
1
7mer
265-278
0.004
1
7mer
3392-3406
0.003
Not Conserved
6mer
967-993
0.002
1
RP11-739N10.1
hsa-miR-199a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584546
Biotype: lincRNA
Gene id: ENSG00000264151
Gene Name: RP11-739N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1291-1314
0.033
1
6mer
1118-1143
0.003
0
RP13-580B18.4
hsa-miR-199a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000624628
Biotype: lincRNA
Gene id: ENSG00000279072
Gene Name: RP13-580B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24046-24070
0.003
0
7mer
19636-19648
0.002
0
7mer
21808-21833
0.002
0
7mer
22162-22187
0.002
0
7mer
17452-17476
0.002
0
7mer
9995-10019
0.002
0
7mer
13815-13839
0.002
0
7mer
2742-2766
0.001
Not Conserved
7mer
6271-6295
0.001
Not Conserved
7mer
8157-8181
0.001
Not Conserved
7mer
11977-12001
0.001
Not Conserved
7mer
4481-4505
0.001
Not Conserved
7mer
15518-15538
0.001
Not Conserved
7mer
17404-17428
0.001
0
7mer
11833-11853
0.001
0
7mer
11785-11809
0.001
0
7mer
17356-17380
0.001
0
7mer
9947-9971
0.001
0
7mer
11929-11953
0.001
0
7mer
11641-11661
0.001
0
7mer
13767-13790
0.001
0
7mer
11737-11760
0.001
0
7mer
11881-11904
0.001
0
7mer
2694-2718
0.001
Not Conserved
7mer
7917-7937
0.001
Not Conserved
7mer
4433-4457
0.001
Not Conserved
7mer
11689-11709
0.001
Not Conserved
7mer
6127-6147
0.001
Not Conserved
7mer
9851-9871
0.001
Not Conserved
7mer
7965-7985
0.000
Not Conserved
7mer
13671-13691
0.000
Not Conserved
7mer
6175-6195
0.000
Not Conserved
7mer
8061-8085
0.000
Not Conserved
7mer
8109-8133
0.000
Not Conserved
7mer
13623-13643
0.000
Not Conserved
7mer
9803-9823
0.000
Not Conserved
7mer
17260-17280
0.000
Not Conserved
7mer
8013-8036
0.000
Not Conserved
7mer
9899-9922
0.000
Not Conserved
7mer
6223-6246
0.000
Not Conserved
7mer
17308-17331
0.000
Not Conserved
7mer
13719-13742
0.000
Not Conserved
XLOC_008106
hsa-miR-199a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017284
Biotype: transcript isomorph
Gene id: XLOC_008106
Gene Name: XLOC_008106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1190-1215
0.030
1
6mer
1854-1880
0.006
0
RFX3-AS1
hsa-miR-199a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423112
Biotype: lincRNA
Gene id: ENSG00000232104
Gene Name: RFX3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-545
0.035
1
CTA-796E4.5
hsa-miR-199a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15728-15740
0.007
0
6mer
64-88
0.004
1
7mer
6219-6241
0.003
2
7mer
19367-19388
0.002
0
6mer
21459-21483
0.002
1
6mer
22818-22832
0.001
2
6mer
29871-29894
0.001
Not Conserved
6mer
26275-26298
0.001
1
6mer
18687-18710
0.001
1
6mer
10866-10889
0.001
2
6mer
28811-28832
0.001
0
6mer
3119-3134
0.001
1
6mer
21194-21216
0.001
0
6mer
15861-15879
0.001
0
6mer
10444-10455
0.001
1
6mer
27381-27385
0.001
0
6mer
28509-28532
0.001
Not Conserved
6mer
8569-8586
0.001
0
7mer
26587-26605
0.001
Not Conserved
6mer
22881-22901
0.000
Not Conserved
PAQR9-AS1
hsa-miR-199a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608349
Biotype: antisense
Gene id: ENSG00000241570
Gene Name: PAQR9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-243
0.035
0
BAIAP2-AS1
hsa-miR-199a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573167
Biotype: lincRNA
Gene id: ENSG00000226137
Gene Name: BAIAP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-295
0.019
0
7mer
327-347
0.005
1
6mer
3631-3646
0.003
1
6mer
83-99
0.002
0
6mer
760-777
0.002
1
7mer
2447-2474
0.002
1
7mer
1068-1088
0.001
Not Conserved
6mer
1588-1612
0.001
0
PAQR9-AS1
hsa-miR-199a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594095
Biotype: antisense
Gene id: ENSG00000241570
Gene Name: PAQR9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-452
0.035
0
RP11-54O7.18
hsa-miR-199a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442292
Biotype: lincRNA
Gene id: ENSG00000273443
Gene Name: RP11-54O7.18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-446
0.029
1
6mer
86-97
0.004
0
7mer
703-719
0.002
Not Conserved
LINC00543
hsa-miR-199a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000567234
Biotype: lincRNA
Gene id: ENSG00000260704
Gene Name: LINC00543
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1648-1665
0.035
2
CTC-339D2.1
hsa-miR-199a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507428
Biotype: lincRNA
Gene id: ENSG00000248107
Gene Name: CTC-339D2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-499
0.028
1
6mer
307-325
0.004
2
6mer
272-297
0.003
Not Conserved
AC084149.2
hsa-miR-199a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437233
Biotype: lincRNA
Gene id: ENSG00000227088
Gene Name: AC084149.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-98
0.023
0
7mer
146-172
0.012
0
LINC01106
hsa-miR-199a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027244.1
Biotype: lincRNA
Gene id: NR_027244.1 (gene)
Gene Name: LINC01106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2133-2156
0.017
5
6mer
2049-2061
0.009
4
7mer
1687-1701
0.006
1
6mer
758-778
0.003
1
WASF3-AS1
hsa-miR-199a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000585599
Biotype: antisense
Gene id: ENSG00000237001
Gene Name: WASF3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
381-397
0.018
1
8mer
438-444
0.017
0
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