LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000723
hsa-miR-199a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001408
Biotype: transcript isomorph
Gene id: XLOC_000723
Gene Name: XLOC_000723
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-66
0.037
1
AC007161.5
hsa-miR-199a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000599208
Biotype: lincRNA
Gene id: ENSG00000234718
Gene Name: AC007161.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-182
0.037
1
XLOC_012004
hsa-miR-199a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025047
Biotype: transcript isomorph
Gene id: XLOC_012004
Gene Name: XLOC_012004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
921-941
0.031
9
6mer
1239-1261
0.003
7
6mer
537-563
0.002
3
AC006115.3
hsa-miR-199a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597946
Biotype: antisense
Gene id: ENSG00000269793
Gene Name: AC006115.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-120
0.037
0
RP5-1177M21.1
hsa-miR-199a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000432942
Biotype: lincRNA
Gene id: ENSG00000234104
Gene Name: RP5-1177M21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-193
0.037
2
RP11-367G6.3
hsa-miR-199a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606385
Biotype: lincRNA
Gene id: ENSG00000272053
Gene Name: RP11-367G6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
761-787
0.019
3
7mer
593-619
0.011
1
6mer
82-98
0.006
4
XLOC_011143
hsa-miR-199a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022889
Biotype: transcript isomorph
Gene id: XLOC_011143
Gene Name: XLOC_011143
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-25
0.037
1
RP4-788P17.1
hsa-miR-199a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424953
Biotype: lincRNA
Gene id: ENSG00000223479
Gene Name: RP4-788P17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-220
0.037
1
AC113331.9
hsa-miR-199a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000428160
Biotype: lincRNA
Gene id: ENSG00000236897
Gene Name: AC113331.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-508
0.037
1
XLOC_001200
hsa-miR-199a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001819
Biotype: transcript isomorph
Gene id: XLOC_001200
Gene Name: XLOC_001200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
996-1015
0.014
1
7mer
9216-9230
0.013
2
6mer
2758-2776
0.002
1
6mer
4371-4387
0.002
1
6mer
5653-5667
0.002
2
6mer
7959-7973
0.001
2
6mer
1457-1481
0.001
1
6mer
1611-1632
0.001
1
SDCBP2-AS1
hsa-miR-199a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000607947
Biotype: antisense
Gene id: ENSG00000234684
Gene Name: SDCBP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
621-645
0.036
3
PRR26
hsa-miR-199a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027152.2
Biotype: sense
Gene id: NR_027152.2 (gene)
Gene Name: PRR26
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2140-2161
0.022
1
8mer
84-99
0.013
1
6mer
1477-1496
0.001
0
AQP4-AS1
hsa-miR-199a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568797
Biotype: antisense
Gene id: ENSG00000260372
Gene Name: AQP4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2051-2058
0.018
1
6mer
2238-2257
0.014
7
6mer
1515-1537
0.004
2
RP11-806J6.1
hsa-miR-199a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000418679
Biotype: lincRNA
Gene id: ENSG00000238131
Gene Name: RP11-806J6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-126
0.036
1
RP11-573D15.8
hsa-miR-199a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599314
Biotype: antisense
Gene id: ENSG00000197099
Gene Name: RP11-573D15.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
59-82
0.032
4
6mer
161-184
0.004
1
LINC01233
hsa-miR-199a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601708
Biotype: lincRNA
Gene id: ENSG00000269364
Gene Name: LINC01233
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-436
0.036
Not Conserved
XLOC_001621
hsa-miR-199a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-666
0.022
1
6mer
681-696
0.007
1
7mer
335-356
0.007
Not Conserved
C14orf182
hsa-miR-199a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000528300
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
306-321
0.024
2
7mer
2142-2165
0.007
1
6mer
2663-2677
0.003
1
6mer
961-983
0.002
1
6mer
1186-1212
0.001
1
LINC00535
hsa-miR-199a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501400
Biotype: antisense
Gene id: ENSG00000246662
Gene Name: LINC00535
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1476-1498
0.021
2
6mer
221-245
0.015
8
CTD-2207A17.1
hsa-miR-199a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508853
Biotype: lincRNA
Gene id: ENSG00000248461
Gene Name: CTD-2207A17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1948-1969
0.027
1
8mer
1987-2007
0.006
1
7mer
1956-1979
0.004
0
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