LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
XLOC_008302
hsa-miR-190b
0.866
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017581
Biotype: transcript isomorph
Gene id: XLOC_008302
Gene Name: XLOC_008302
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
739-754
0.020
0
8mer
589-610
0.013
Not Conserved
7mer
231-253
0.008
Not Conserved
XLOC_008301
hsa-miR-190b
0.866
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017580
Biotype: transcript isomorph
Gene id: XLOC_008301
Gene Name: XLOC_008301
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
739-754
0.020
0
8mer
589-610
0.013
Not Conserved
7mer
231-253
0.008
Not Conserved
TTTY4C
hsa-miR-190b
0.866
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000456123
Biotype: lincRNA
Gene id: ENSG00000228296
Gene Name: TTTY4C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
593-608
0.020
0
8mer
737-758
0.013
Not Conserved
7mer
1094-1116
0.008
Not Conserved
TTTY4
hsa-miR-190b
0.866
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000436568
Biotype: lincRNA
Gene id: ENSG00000226906
Gene Name: TTTY4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
739-754
0.020
0
8mer
589-610
0.013
Not Conserved
7mer
231-253
0.008
Not Conserved
TTTY4B
hsa-miR-190b
0.866
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000420149
Biotype: lincRNA
Gene id: ENSG00000235412
Gene Name: TTTY4B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
739-754
0.020
0
8mer
589-610
0.013
Not Conserved
7mer
231-253
0.008
Not Conserved
RP11-15H20.6
hsa-miR-190b
0.864
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397094
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1492-1514
0.037
1
6mer
346-367
0.004
0
XLOC_001121
hsa-miR-190b
0.864
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001746
Biotype: transcript isomorph
Gene id: XLOC_001121
Gene Name: XLOC_001121
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1405-1430
0.041
0
RP11-248G5.9
hsa-miR-190b
0.863
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613982
Biotype: antisense
Gene id: ENSG00000273523
Gene Name: RP11-248G5.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3409-3429
0.038
Not Conserved
6mer
1279-1297
0.003
1
RP11-500B12.1
hsa-miR-190b
0.862
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450938
Biotype: lincRNA
Gene id: ENSG00000233569
Gene Name: RP11-500B12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1064-1084
0.036
2
6mer
1137-1150
0.004
1
MIR7515HG
hsa-miR-190b
0.862
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587628
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-36
0.041
1
RP11-24I21.1
hsa-miR-190b
0.861
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503100
Biotype: lincRNA
Gene id: ENSG00000248210
Gene Name: RP11-24I21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1985-2004
0.032
1
6mer
2437-2459
0.006
1
6mer
1600-1624
0.003
0
XLOC_007035
hsa-miR-190b
0.860
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
372-389
0.004
0
6mer
4401-4427
0.002
1
6mer
14624-14650
0.001
0
6mer
14032-14050
0.001
0
6mer
18647-18655
0.001
Not Conserved
6mer
11137-11150
0.001
0
6mer
18541-18549
0.001
Not Conserved
6mer
18499-18508
0.001
Not Conserved
6mer
14329-14355
0.001
0
6mer
17263-17289
0.001
0
6mer
16911-16933
0.001
0
6mer
12327-12350
0.001
0
6mer
15374-15397
0.001
0
6mer
12879-12902
0.001
0
6mer
14996-15013
0.001
0
6mer
13807-13831
0.001
0
6mer
16034-16042
0.001
0
6mer
13019-13045
0.001
0
6mer
15226-15252
0.001
0
6mer
12516-12538
0.001
0
6mer
12655-12678
0.001
0
6mer
15564-15581
0.001
Not Conserved
6mer
16272-16280
0.001
Not Conserved
6mer
13208-13231
0.001
0
6mer
15880-15897
0.001
Not Conserved
6mer
12264-12282
0.001
0
6mer
13689-13715
0.001
0
6mer
15802-15819
0.001
0
6mer
13145-13161
0.001
0
6mer
13336-13361
0.001
0
6mer
13399-13421
0.001
0
6mer
13462-13484
0.001
0
6mer
12803-12826
0.001
0
6mer
13525-13550
0.001
0
6mer
12727-12750
0.001
0
6mer
14921-14948
0.001
0
6mer
13588-13611
0.001
0
6mer
12165-12191
0.001
0
6mer
13957-13983
0.000
0
6mer
14590-14615
0.000
0
6mer
14549-14575
0.000
0
6mer
13664-13688
0.000
0
6mer
13998-14020
0.000
0
RP11-325K4.3
hsa-miR-190b
0.859
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565861
Biotype: sense_intronic
Gene id: ENSG00000261270
Gene Name: RP11-325K4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
290-303
0.040
1
AC007246.3
hsa-miR-190b
0.859
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451547
Biotype: antisense
Gene id: ENSG00000231312
Gene Name: AC007246.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-133
0.040
1
RP11-508N22.9
hsa-miR-190b
0.858
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000423162
Biotype: lincRNA
Gene id: ENSG00000224761
Gene Name: RP11-508N22.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
372-396
0.040
0
RP11-543N12.1
hsa-miR-190b
0.858
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564635
Biotype: antisense
Gene id: ENSG00000261410
Gene Name: RP11-543N12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-349
0.040
6
RP11-554D14.7
hsa-miR-190b
0.858
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552154
Biotype: lincRNA
Gene id: ENSG00000257141
Gene Name: RP11-554D14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-142
0.040
0
XLOC_005918
hsa-miR-190b
0.858
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012825
Biotype: transcript isomorph
Gene id: XLOC_005918
Gene Name: XLOC_005918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1084-1110
0.014
2
7mer
41-59
0.013
1
7mer
628-642
0.010
0
7mer
898-917
0.003
Not Conserved
LL22NC03-22D1.1
hsa-miR-190b
0.856
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24023-24049
0.006
1
8mer
19166-19188
0.006
1
7mer
8842-8868
0.005
4
7mer
21075-21091
0.003
0
7mer
6585-6611
0.002
0
7mer
26659-26680
0.002
0
6mer
2665-2689
0.002
0
6mer
1113-1134
0.002
0
6mer
4487-4500
0.002
1
6mer
11587-11601
0.002
0
6mer
16804-16816
0.002
1
6mer
12996-13018
0.002
2
6mer
7933-7953
0.001
0
6mer
10986-11003
0.001
1
6mer
21177-21189
0.001
1
6mer
7114-7136
0.001
0
6mer
7179-7205
0.001
1
XLOC_008328
hsa-miR-190b
0.855
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1043-1068
0.040
0
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