LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
LOC101929657
hsa-miR-190b
0.878
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_110306.1
Biotype: antisense
Gene id: NR_110306.1 (gene)
Gene Name: LOC101929657
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3405-3425
0.040
Not Conserved
6mer
1275-1293
0.003
1
SATB1-AS1
hsa-miR-190b
0.878
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000453361
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-240
0.043
0
XLOC_010142
hsa-miR-190b
0.876
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020859
Biotype: transcript isomorph
Gene id: XLOC_010142
Gene Name: XLOC_010142
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1998-2018
0.043
0
ZNRD1-AS1
hsa-miR-190b
0.876
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000452229
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
275-296
0.019
1
8mer
2341-2364
0.008
1
6mer
34-59
0.007
1
6mer
183-205
0.004
1
6mer
2545-2566
0.002
1
6mer
2054-2071
0.002
1
6mer
1936-1952
0.001
3
RP11-203B9.4
hsa-miR-190b
0.875
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000589549
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-110
0.043
8
RP11-506B6.6
hsa-miR-190b
0.875
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585611
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
461-484
0.032
1
7mer
136-154
0.011
1
XLOC_009793
hsa-miR-190b
0.874
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020462
Biotype: transcript isomorph
Gene id: XLOC_009793
Gene Name: XLOC_009793
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2278-2298
0.040
1
6mer
911-922
0.002
1
AC098820.3
hsa-miR-190b
0.873
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431856
Biotype: retained_intron
Gene id: ENSG00000232485
Gene Name: AC098820.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-88
0.042
1
MIR6818
hsa-miR-190b
0.873
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19862-19880
0.014
12
8mer
24732-24758
0.009
0
7mer
48106-48126
0.007
1
7mer
27301-27318
0.005
1
6mer
6939-6961
0.002
0
6mer
3700-3712
0.002
5
6mer
40974-40987
0.001
0
6mer
14857-14877
0.001
1
6mer
15654-15677
0.001
1
LINC01410
hsa-miR-190b
0.872
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2565-2584
0.042
0
XLOC_011708
hsa-miR-190b
0.871
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024381
Biotype: transcript isomorph
Gene id: XLOC_011708
Gene Name: XLOC_011708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-190
0.042
0
XLOC_008223
hsa-miR-190b
0.871
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017539
Biotype: transcript isomorph
Gene id: XLOC_008223
Gene Name: XLOC_008223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-232
0.042
0
RP11-749H17.1
hsa-miR-190b
0.870
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585897
Biotype: sense_intronic
Gene id: ENSG00000266988
Gene Name: RP11-749H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
461-484
0.039
1
6mer
572-590
0.003
1
CSMD2-AS1
hsa-miR-190b
0.870
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425631
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1111-1123
0.035
4
6mer
966-987
0.007
3
RP5-1007G16.1
hsa-miR-190b
0.870
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038372.1
Biotype: antisense
Gene id: NR_038372.1 (gene)
Gene Name: RP5-1007G16.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1108-1120
0.035
4
6mer
963-984
0.007
3
ALG13-AS1
hsa-miR-190b
0.869
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000430794
Biotype: antisense
Gene id: ENSG00000229487
Gene Name: ALG13-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-171
0.042
2
RP11-138A9.1
hsa-miR-190b
0.868
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605249
Biotype: lincRNA
Gene id: ENSG00000271204
Gene Name: RP11-138A9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1760-1778
0.041
2
RP11-1002K11.1
hsa-miR-190b
0.868
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607314
Biotype: lincRNA
Gene id: ENSG00000272327
Gene Name: RP11-1002K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1350-1363
0.038
7
6mer
1408-1428
0.003
1
RP3-323A16.1
hsa-miR-190b
0.867
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3234-3260
0.007
0
8mer
19669-19684
0.005
0
7mer
48565-48585
0.004
1
7mer
40538-40565
0.004
1
7mer
49267-49285
0.003
1
6mer
38095-38115
0.002
1
8mer+mismatch
28762-28786
0.002
0
6mer
33481-33496
0.002
Not Conserved
6mer
6580-6596
0.002
0
6mer
2606-2628
0.002
1
6mer
8002-8029
0.001
0
6mer
38353-38373
0.001
2
6mer
20522-20530
0.001
0
6mer
8730-8746
0.001
0
6mer
16002-16009
0.001
0
6mer
28952-28960
0.001
1
6mer
28871-28882
0.001
1
XLOC_008332
hsa-miR-190b
0.867
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017595
Biotype: transcript isomorph
Gene id: XLOC_008332
Gene Name: XLOC_008332
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
592-607
0.020
0
8mer
736-757
0.013
Not Conserved
7mer
1093-1115
0.008
Not Conserved
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