LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
PTPRD-AS2
hsa-miR-190b
0.912
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429581
Biotype: lincRNA
Gene id: ENSG00000226717
Gene Name: PTPRD-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2707-2726
0.019
0
7mer
450-475
0.012
0
7mer
2254-2277
0.010
1
7mer
1413-1436
0.006
1
6mer
1163-1189
0.002
0
RP11-123O22.1
hsa-miR-190b
0.911
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509416
Biotype: lincRNA
Gene id: ENSG00000250064
Gene Name: RP11-123O22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
654-671
0.049
1
RP11-734B5.2
hsa-miR-190b
0.911
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000613819
Biotype: sense_intronic
Gene id: ENSG00000276092
Gene Name: RP11-734B5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-151
0.042
1
6mer
364-374
0.006
1
CTD-2256P15.4
hsa-miR-190b
0.907
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606194
Biotype: antisense
Gene id: ENSG00000271980
Gene Name: CTD-2256P15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2168-2191
0.037
1
6mer
60-76
0.011
11
FER1L6-AS1
hsa-miR-190b
0.907
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518567
Biotype: antisense
Gene id: ENSG00000181171
Gene Name: FER1L6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-30
0.031
0
7mer
635-654
0.011
0
6mer
44-56
0.006
1
XLOC_013266
hsa-miR-190b
0.907
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027228
Biotype: transcript isomorph
Gene id: XLOC_013266
Gene Name: XLOC_013266
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1686-1711
0.023
Not Conserved
8mer
1463-1483
0.013
Not Conserved
8mer
856-883
0.005
Not Conserved
7mer
1352-1377
0.004
Not Conserved
7mer
631-638
0.003
Not Conserved
RP11-379J13.2
hsa-miR-190b
0.906
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526385
Biotype: lincRNA
Gene id: ENSG00000255502
Gene Name: RP11-379J13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-308
0.039
2
7mer
134-150
0.009
0
XLOC_006111
hsa-miR-190b
0.906
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013454
Biotype: transcript isomorph
Gene id: XLOC_006111
Gene Name: XLOC_006111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-518
0.040
1
6mer
133-154
0.007
0
RP11-413H22.3
hsa-miR-190b
0.905
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000618027
Biotype: antisense
Gene id: ENSG00000274031
Gene Name: RP11-413H22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-273
0.044
0
6mer
437-454
0.004
2
RP11-492A10.1
hsa-miR-190b
0.904
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514115
Biotype: antisense
Gene id: ENSG00000246316
Gene Name: RP11-492A10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
261-278
0.047
1
RP11-189B4.7
hsa-miR-190b
0.903
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000612699
Biotype: lincRNA
Gene id: ENSG00000277228
Gene Name: RP11-189B4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-305
0.047
0
XLOC_013010
hsa-miR-190b
0.903
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-125
0.031
0
6mer
1375-1396
0.017
0
XLOC_007710
hsa-miR-190b
0.903
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-315
0.047
0
XLOC_005479
hsa-miR-190b
0.901
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012608
Biotype: transcript isomorph
Gene id: XLOC_005479
Gene Name: XLOC_005479
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
481-506
0.047
1
DGCR5
hsa-miR-190b
0.901
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424407
Biotype: antisense
Gene id: ENSG00000237517
Gene Name: DGCR5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
713-730
0.047
0
LOC100190986
hsa-miR-190b
0.900
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2071-2088
0.038
0
6mer
1247-1264
0.008
0
RP11-475A13.2
hsa-miR-190b
0.900
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-575
0.026
1
6mer
1968-1992
0.013
1
6mer
112-124
0.008
0
FLJ41278
hsa-miR-190b
0.900
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535058
Biotype: lincRNA
Gene id: ENSG00000255693
Gene Name: FLJ41278
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3525-3540
0.047
1
RP11-78O9.1
hsa-miR-190b
0.899
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439455
Biotype: antisense
Gene id: ENSG00000233482
Gene Name: RP11-78O9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
148-174
0.047
0
AC016710.1
hsa-miR-190b
0.899
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421326
Biotype: lincRNA
Gene id: ENSG00000229131
Gene Name: AC016710.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
185-206
0.046
1
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