LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
CTD-2554C21.3
hsa-miR-190b
0.954
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000443870
Biotype: lincRNA
Gene id: ENSG00000229481
Gene Name: CTD-2554C21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1706-1726
0.060
6
CTC-546K23.1
hsa-miR-190b
0.953
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000599562
Biotype: lincRNA
Gene id: ENSG00000229855
Gene Name: CTC-546K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
29-50
0.060
0
MAGI2-AS3
hsa-miR-190b
0.953
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8047-8072
0.025
1
8mer
456-475
0.017
1
8mer
3025-3045
0.008
Not Conserved
6mer
952-961
0.003
1
7mer
2916-2931
0.003
1
6mer
7087-7099
0.002
2
6mer
1675-1698
0.002
1
6mer
7111-7134
0.001
1
XLOC_005521
hsa-miR-190b
0.952
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012006
Biotype: transcript isomorph
Gene id: XLOC_005521
Gene Name: XLOC_005521
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-136
0.060
0
XLOC_001401
hsa-miR-190b
0.951
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1064-1085
0.034
0
7mer
1516-1534
0.025
0
LOC100128885
hsa-miR-190b
0.950
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3355-3379
0.022
0
8mer
1894-1918
0.010
0
7mer
434-455
0.010
0
7mer
3597-3608
0.007
0
7mer
1271-1283
0.005
0
7mer
3453-3476
0.005
0
XLOC_005229
hsa-miR-190b
0.950
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011767
Biotype: transcript isomorph
Gene id: XLOC_005229
Gene Name: XLOC_005229
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
300-319
0.059
0
AC006548.28
hsa-miR-190b
0.949
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73841-73862
0.007
1
7mer
20206-20225
0.005
0
7mer
80805-80828
0.004
0
7mer
63641-63665
0.004
1
6mer
84234-84257
0.003
1
7mer
59104-59118
0.003
0
6mer
56127-56141
0.002
1
8mer+mismatch
36976-36990
0.002
2
6mer
81049-81063
0.002
0
6mer
70296-70315
0.002
0
6mer
15484-15507
0.002
0
6mer
66532-66550
0.002
0
6mer
64648-64674
0.002
1
6mer
71714-71735
0.002
0
6mer
59538-59564
0.002
1
6mer
68870-68891
0.001
0
6mer
50829-50845
0.001
Not Conserved
6mer
79380-79394
0.001
Not Conserved
6mer
28531-28548
0.001
1
6mer
49398-49412
0.001
Not Conserved
6mer
46712-46720
0.001
Not Conserved
6mer
35020-35037
0.001
0
6mer
4269-4295
0.001
0
6mer
48681-48690
0.001
Not Conserved
6mer
22006-22021
0.001
1
6mer
12570-12583
0.001
0
6mer
49642-49666
0.001
Not Conserved
6mer
25782-25805
0.001
0
6mer
39268-39289
0.001
0
XLOC_011179
hsa-miR-190b
0.945
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023310
Biotype: transcript isomorph
Gene id: XLOC_011179
Gene Name: XLOC_011179
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
331-349
0.046
1
6mer
492-507
0.012
1
RP11-871F6.3
hsa-miR-190b
0.941
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540399
Biotype: lincRNA
Gene id: ENSG00000256994
Gene Name: RP11-871F6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
853-868
0.053
2
6mer
714-729
0.003
0
RP11-492A10.1
hsa-miR-190b
0.941
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506265
Biotype: antisense
Gene id: ENSG00000246316
Gene Name: RP11-492A10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
414-431
0.056
1
RP11-325K19.1
hsa-miR-190b
0.940
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591869
Biotype: lincRNA
Gene id: ENSG00000267098
Gene Name: RP11-325K19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-78
0.047
2
8mer+wobble
181-207
0.009
3
RP11-856M7.6
hsa-miR-190b
0.939
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584734
Biotype: lincRNA
Gene id: ENSG00000266604
Gene Name: RP11-856M7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
812-833
0.055
0
CTA-796E4.5
hsa-miR-190b
0.938
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7916-7936
0.012
1
7mer
30445-30466
0.006
1
7mer
17792-17809
0.005
0
7mer
2823-2843
0.005
1
6mer
31281-31297
0.005
2
7mer
8336-8351
0.003
1
7mer
14831-14843
0.003
0
6mer
1179-1199
0.003
1
8mer+wobble
16896-16915
0.002
0
6mer
23329-23339
0.002
0
7mer
7352-7371
0.002
0
6mer
22678-22693
0.001
0
6mer
16727-16736
0.001
1
6mer
2073-2100
0.001
1
6mer
22067-22088
0.001
0
AC092657.2
hsa-miR-190b
0.938
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436266
Biotype: lincRNA
Gene id: ENSG00000237760
Gene Name: AC092657.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
212-229
0.055
1
NUTM2B-AS1
hsa-miR-190b
0.935
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619625
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2906-2925
0.033
1
8mer
4704-4716
0.008
0
6mer
1271-1289
0.003
1
6mer
3617-3638
0.002
1
6mer
4052-4071
0.002
1
6mer
4859-4878
0.002
0
6mer
1242-1251
0.002
2
6mer
4356-4374
0.001
0
RP11-506B6.6
hsa-miR-190b
0.934
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585504
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
461-484
0.043
1
7mer
136-154
0.011
1
LINC01330
hsa-miR-190b
0.934
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000459923
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1493-1520
0.041
2
6mer
243-267
0.006
5
6mer
1290-1306
0.004
1
6mer
18-38
0.003
2
RP11-129I19.2
hsa-miR-190b
0.933
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000560688
Biotype: lincRNA
Gene id: ENSG00000259757
Gene Name: RP11-129I19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
167-182
0.046
0
6mer
6-25
0.008
1
RP11-480C16.1
hsa-miR-190b
0.933
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608834
Biotype: lincRNA
Gene id: ENSG00000272563
Gene Name: RP11-480C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-333
0.032
0
8mer
301-319
0.022
Not Conserved
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