LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
CTD-2076M15.1
hsa-miR-190b
0.986
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561587
Biotype: lincRNA
Gene id: ENSG00000260683
Gene Name: CTD-2076M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
613-637
0.070
0
6mer
445-455
0.010
1
RP11-531F16.4
hsa-miR-190b
0.983
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608000
Biotype: antisense
Gene id: ENSG00000273261
Gene Name: RP11-531F16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
163-182
0.078
3
LINC00664
hsa-miR-190b
0.983
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596718
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1963-1987
0.019
1
8mer
362-386
0.010
Not Conserved
7mer
2256-2278
0.008
0
7mer
2469-2484
0.008
0
8mer
507-532
0.005
Not Conserved
7mer
1167-1183
0.005
0
7mer
807-833
0.005
Not Conserved
7mer
254-278
0.004
Not Conserved
8mer
845-865
0.004
Not Conserved
8mer
1380-1402
0.003
0
8mer
944-968
0.003
Not Conserved
8mer
1306-1331
0.003
Not Conserved
7mer
1449-1470
0.001
Not Conserved
XLOC_006459
hsa-miR-190b
0.982
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014308
Biotype: transcript isomorph
Gene id: XLOC_006459
Gene Name: XLOC_006459
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
987-1009
0.022
0
8mer
916-943
0.022
0
7mer
770-793
0.017
1
8mer
628-642
0.015
0
GS1-166A23.2
hsa-miR-190b
0.981
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000607795
Biotype: lincRNA
Gene id: ENSG00000272361
Gene Name: GS1-166A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-83
0.075
0
LINC00664
hsa-miR-190b
0.973
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1675-1699
0.019
1
7mer
3699-3723
0.012
0
7mer
879-895
0.007
0
8mer
562-577
0.007
Not Conserved
8mer
405-430
0.005
Not Conserved
8mer
1092-1114
0.005
0
8mer
656-680
0.004
Not Conserved
7mer
298-322
0.004
Not Conserved
8mer
1018-1043
0.003
Not Conserved
7mer
1161-1182
0.001
Not Conserved
RP11-262H14.3
hsa-miR-190b
0.973
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000445604
Biotype: lincRNA
Gene id: ENSG00000234665
Gene Name: RP11-262H14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
65-89
0.065
0
6mer
163-183
0.004
Not Conserved
RP11-305L7.3
hsa-miR-190b
0.971
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457976
Biotype: lincRNA
Gene id: ENSG00000237422
Gene Name: RP11-305L7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3-26
0.068
0
RP11-38P22.2
hsa-miR-190b
0.970
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460407
Biotype: lincRNA
Gene id: ENSG00000241732
Gene Name: RP11-38P22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1554-1575
0.067
5
XLOC_001134
hsa-miR-190b
0.966
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001765
Biotype: transcript isomorph
Gene id: XLOC_001134
Gene Name: XLOC_001134
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2657-2675
0.065
1
RP11-106M7.1
hsa-miR-190b
0.966
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436932
Biotype: lincRNA
Gene id: ENSG00000228484
Gene Name: RP11-106M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1684-1704
0.040
0
7mer
1907-1930
0.020
2
6mer
2129-2148
0.005
0
RP11-384P7.7
hsa-miR-190b
0.965
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
938-962
0.021
1
7mer
3269-3291
0.016
0
7mer
3078-3098
0.016
1
7mer
2113-2134
0.011
2
XLOC_002204
hsa-miR-190b
0.959
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004331
Biotype: transcript isomorph
Gene id: XLOC_002204
Gene Name: XLOC_002204
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-161
0.029
0
7mer
109-128
0.020
Not Conserved
7mer
285-300
0.013
Not Conserved
LINC01277
hsa-miR-190b
0.958
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419957
Biotype: lincRNA
Gene id: ENSG00000229017
Gene Name: LINC01277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2309-2331
0.051
1
7mer
48-63
0.011
1
LINC00347
hsa-miR-190b
0.958
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000596240
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-461
0.062
3
LINC01224
hsa-miR-190b
0.957
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596763
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-103
0.061
1
LINC01095
hsa-miR-190b
0.956
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513023
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
12-29
0.061
0
RP11-80F22.15
hsa-miR-190b
0.955
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562591
Biotype: lincRNA
Gene id: ENSG00000260857
Gene Name: RP11-80F22.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-23
0.061
0
RP1-8B1.4
hsa-miR-190b
0.955
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444038
Biotype: antisense
Gene id: ENSG00000231769
Gene Name: RP1-8B1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
34-56
0.049
0
7mer
146-155
0.011
1
XLOC_006123
hsa-miR-190b
0.954
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013475
Biotype: transcript isomorph
Gene id: XLOC_006123
Gene Name: XLOC_006123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-100
0.022
0
6mer
409-433
0.008
0
7mer
584-609
0.008
0
7mer
457-467
0.008
0
8mer
1522-1548
0.007
Not Conserved
7mer
1668-1683
0.004
Not Conserved
7mer
1375-1399
0.003
Not Conserved
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