LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
MIR7515HG
hsa-miR-190b
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590865
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-433
0.025
1
XLOC_010469
hsa-miR-190b
0.707
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021501
Biotype: transcript isomorph
Gene id: XLOC_010469
Gene Name: XLOC_010469
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-392
0.013
0
7mer
633-652
0.008
1
6mer
1112-1131
0.004
2
XLOC_001963
hsa-miR-190b
0.707
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004113
Biotype: transcript isomorph
Gene id: XLOC_001963
Gene Name: XLOC_001963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1440-1461
0.025
1
MIR4500HG
hsa-miR-190b
0.706
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606590
Biotype: lincRNA
Gene id: ENSG00000228824
Gene Name: MIR4500HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
190-212
0.025
1
MLIP-AS1
hsa-miR-190b
0.706
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590739
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-251
0.012
1
6mer
575-601
0.007
3
6mer
82-101
0.004
0
6mer
361-371
0.002
Not Conserved
SNHG14
hsa-miR-190b
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553134
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-134
0.025
1
XLOC_005715
hsa-miR-190b
0.704
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012166
Biotype: transcript isomorph
Gene id: XLOC_005715
Gene Name: XLOC_005715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3590-3613
0.016
0
7mer
2867-2886
0.007
2
6mer
2383-2402
0.002
0
RP11-161I2.1
hsa-miR-190b
0.704
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524252
Biotype: antisense
Gene id: ENSG00000187229
Gene Name: RP11-161I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1660-1677
0.018
0
8mer+wobble
944-964
0.007
0
LINC01516
hsa-miR-190b
0.704
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436140
Biotype: lincRNA
Gene id: ENSG00000231422
Gene Name: LINC01516
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2524-2542
0.023
2
6mer
1035-1048
0.002
0
CTD-2161F6.2
hsa-miR-190b
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506059
Biotype: lincRNA
Gene id: ENSG00000248311
Gene Name: CTD-2161F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-345
0.025
0
CPS1-IT1
hsa-miR-190b
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_002763.2
Biotype: sense
Gene id: NR_002763.2 (gene)
Gene Name: CPS1-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2205-2230
0.017
0
6mer
2040-2057
0.004
1
6mer
744-768
0.004
1
MIR7515HG
hsa-miR-190b
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592394
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-585
0.025
1
RP11-712B9.2
hsa-miR-190b
0.703
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540692
Biotype: antisense
Gene id: ENSG00000245552
Gene Name: RP11-712B9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
635-655
0.025
4
MAGI2-AS3
hsa-miR-190b
0.702
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000621901
Biotype: antisense
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-182
0.025
1
LINC01419
hsa-miR-190b
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522365
Biotype: lincRNA
Gene id: ENSG00000253898
Gene Name: LINC01419
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1201-1221
0.025
1
RP11-96D24.1
hsa-miR-190b
0.701
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555636
Biotype: lincRNA
Gene id: ENSG00000259072
Gene Name: RP11-96D24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-142
0.020
3
6mer
245-261
0.005
1
RP11-173E2.2
hsa-miR-190b
0.700
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506232
Biotype: lincRNA
Gene id: ENSG00000250977
Gene Name: RP11-173E2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-143
0.025
2
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