LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
AC079586.1
hsa-miR-190b
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000375987
Biotype: lincRNA
Gene id: ENSG00000204460
Gene Name: AC079586.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-525
0.013
0
8mer
927-953
0.006
0
7mer
1149-1174
0.004
0
7mer
801-825
0.003
0
PTPRG-AS1
hsa-miR-190b
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490916
Biotype: antisense
Gene id: ENSG00000241472
Gene Name: PTPRG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-122
0.027
1
RP11-1084I9.1
hsa-miR-190b
0.725
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000383019
Biotype: lincRNA
Gene id: ENSG00000206187
Gene Name: RP11-1084I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-237
0.027
1
SEMA6A-AS1
hsa-miR-190b
0.724
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507558
Biotype: antisense
Gene id: ENSG00000248445
Gene Name: SEMA6A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-160
0.026
Not Conserved
STK24-AS1
hsa-miR-190b
0.724
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000434547
Biotype: antisense
Gene id: ENSG00000224418
Gene Name: STK24-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1045-1060
0.026
1
AC141928.1
hsa-miR-190b
0.724
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511928
Biotype: lincRNA
Gene id: ENSG00000250986
Gene Name: AC141928.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3878-3905
0.020
0
7mer
3828-3845
0.006
1
XLOC_013690
hsa-miR-190b
0.724
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028641
Biotype: transcript isomorph
Gene id: XLOC_013690
Gene Name: XLOC_013690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-561
0.023
0
6mer
850-874
0.004
0
SNHG14
hsa-miR-190b
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000552781
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-56
0.026
1
RP11-819C21.1
hsa-miR-190b
0.723
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561746
Biotype: lincRNA
Gene id: ENSG00000261098
Gene Name: RP11-819C21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1868-1883
0.016
1
7mer
1403-1422
0.007
1
6mer
3002-3026
0.003
1
RP11-284J1.1
hsa-miR-190b
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606622
Biotype: lincRNA
Gene id: ENSG00000272485
Gene Name: RP11-284J1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1148-1170
0.026
0
ST7-OT3
hsa-miR-190b
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_002332.1
Biotype: sense
Gene id: NR_002332.1 (gene)
Gene Name: ST7-OT3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
903-917
0.026
6
MUC19
hsa-miR-190b
0.720
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24589-24604
0.010
0
8mer
2209-2223
0.008
2
7mer
11991-12009
0.002
Not Conserved
6mer
13156-13174
0.001
0
6mer
22396-22420
0.001
0
6mer
10525-10545
0.001
Not Conserved
6mer
13453-13471
0.001
Not Conserved
6mer
14503-14521
0.001
Not Conserved
FLJ34503
hsa-miR-190b
0.719
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000314481
Biotype: antisense
Gene id: ENSG00000175967
Gene Name: FLJ34503
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1843-1863
0.026
1
RP11-94H18.1
hsa-miR-190b
0.718
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517356
Biotype: lincRNA
Gene id: ENSG00000248964
Gene Name: RP11-94H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-318
0.018
3
7mer
963-987
0.008
1
XLOC_010177
hsa-miR-190b
0.717
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020900
Biotype: transcript isomorph
Gene id: XLOC_010177
Gene Name: XLOC_010177
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-128
0.019
1
6mer
26-42
0.007
2
RP11-276H19.2
hsa-miR-190b
0.716
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602579
Biotype: lincRNA
Gene id: ENSG00000269994
Gene Name: RP11-276H19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
906-923
0.021
0
6mer
1421-1439
0.004
1
MYT1L-AS1
hsa-miR-190b
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422175
Biotype: antisense
Gene id: ENSG00000225619
Gene Name: MYT1L-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
850-864
0.015
4
6mer
225-240
0.005
3
6mer
3121-3131
0.005
1
RP1-37J18.2
hsa-miR-190b
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420522
Biotype: lincRNA
Gene id: ENSG00000232596
Gene Name: RP1-37J18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-586
0.026
1
CTB-32O4.4
hsa-miR-190b
0.715
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000615154
Biotype: lincRNA
Gene id: ENSG00000276631
Gene Name: CTB-32O4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
321-332
0.020
Not Conserved
6mer
244-264
0.006
1
XLOC_012821
hsa-miR-190b
0.714
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026495
Biotype: transcript isomorph
Gene id: XLOC_012821
Gene Name: XLOC_012821
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-224
0.026
2
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