LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
RP11-89N17.4
hsa-miR-190b
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440034
Biotype: lincRNA
Gene id: ENSG00000236494
Gene Name: RP11-89N17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-72
0.028
0
LOC284578
hsa-miR-190b
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027086.1
Biotype: lincRNA
Gene id: NR_027086.1 (gene)
Gene Name: LOC284578
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
659-671
0.019
1
6mer
459-480
0.004
0
6mer
1501-1521
0.003
1
6mer
740-766
0.002
1
LINC01204
hsa-miR-190b
0.739
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000422047
Biotype: lincRNA
Gene id: ENSG00000229563
Gene Name: LINC01204
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-470
0.024
1
6mer
577-593
0.004
0
LINC00461
hsa-miR-190b
0.739
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511014
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-78
0.021
6
7mer
1021-1045
0.005
1
6mer
2127-2146
0.002
1
CTA-544A11.1
hsa-miR-190b
0.739
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5231-5246
0.012
4
7mer
11896-11922
0.008
0
7mer
10617-10640
0.004
1
6mer
5789-5804
0.002
1
6mer
7121-7141
0.002
1
RP11-321M21.1
hsa-miR-190b
0.737
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579278
Biotype: lincRNA
Gene id: ENSG00000266774
Gene Name: RP11-321M21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-197
0.023
0
6mer
499-516
0.004
2
LOC646471
hsa-miR-190b
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_024498.1
Biotype: antisense
Gene id: NR_024498.1 (gene)
Gene Name: LOC646471
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3073-3092
0.028
8
AC096579.13
hsa-miR-190b
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000434790
Biotype: lincRNA
Gene id: ENSG00000240040
Gene Name: AC096579.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-301
0.028
1
RP5-1013A22.5
hsa-miR-190b
0.737
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000608247
Biotype: lincRNA
Gene id: ENSG00000273283
Gene Name: RP5-1013A22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-389
0.028
6
RP11-630D6.5
hsa-miR-190b
0.736
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501239
Biotype: antisense
Gene id: ENSG00000245928
Gene Name: RP11-630D6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1519-1537
0.027
0
CTD-2017D11.1
hsa-miR-190b
0.736
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
451-473
0.027
1
XLOC_012419
hsa-miR-190b
0.736
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025589
Biotype: transcript isomorph
Gene id: XLOC_012419
Gene Name: XLOC_012419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
453-474
0.014
Not Conserved
6mer
16-32
0.005
Not Conserved
6mer
41-64
0.005
Not Conserved
6mer
684-709
0.004
Not Conserved
XLOC_010384
hsa-miR-190b
0.734
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021786
Biotype: transcript isomorph
Gene id: XLOC_010384
Gene Name: XLOC_010384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1569-1586
0.015
1
6mer
1480-1496
0.005
3
6mer
1773-1793
0.004
3
6mer
296-308
0.003
1
MIR7515HG
hsa-miR-190b
0.734
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590961
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-185
0.027
1
RP11-563E2.2
hsa-miR-190b
0.734
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503478
Biotype: antisense
Gene id: ENSG00000250027
Gene Name: RP11-563E2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-60
0.027
1
RP13-653N12.1
hsa-miR-190b
0.734
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540745
Biotype: lincRNA
Gene id: ENSG00000256551
Gene Name: RP13-653N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
706-729
0.027
1
MIR490
hsa-miR-190b
0.734
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439694
Biotype: antisense
Gene id: ENSG00000234352
Gene Name: MIR490
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1047-1055
0.027
Not Conserved
XLOC_009043
hsa-miR-190b
0.734
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019211
Biotype: transcript isomorph
Gene id: XLOC_009043
Gene Name: XLOC_009043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
396-418
0.019
0
8mer
460-479
0.008
Not Conserved
CTC-304I17.2
hsa-miR-190b
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577709
Biotype: antisense
Gene id: ENSG00000264791
Gene Name: CTC-304I17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-343
0.020
1
7mer
225-243
0.007
0
LINC00377
hsa-miR-190b
0.733
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456588
Biotype: lincRNA
Gene id: ENSG00000229246
Gene Name: LINC00377
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
497-511
0.027
0
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