LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
CTD-2291D10.2
hsa-miR-190b
0.999
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000565584
Biotype: lincRNA
Gene id: ENSG00000261558
Gene Name: CTD-2291D10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-467
0.107
0
6mer
641-665
0.012
0
CTD-2291D10.3
hsa-miR-190b
0.998
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599269
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-131
0.117
0
CTD-2291D10.4
hsa-miR-190b
0.997
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594318
Biotype: lincRNA
Gene id: ENSG00000267886
Gene Name: CTD-2291D10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-312
0.107
0
LINC00293
hsa-miR-190b
0.997
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
816-838
0.076
1
8mer
1375-1396
0.022
0
7mer
1520-1541
0.009
0
LINC00889
hsa-miR-190b
0.997
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_026935.1
Biotype: lincRNA
Gene id: NR_026935.1 (gene)
Gene Name: LINC00889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2535-2554
0.097
1
6mer
140-160
0.006
1
6mer
2444-2460
0.003
0
KCNQ1OT1
hsa-miR-190b
0.996
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35333-35346
0.008
0
8mer
3497-3510
0.007
1
8mer
88042-88057
0.007
2
9mer
41870-41890
0.006
Not Conserved
7mer
51631-51655
0.005
1
7mer
34697-34711
0.005
0
7mer
14637-14657
0.005
1
7mer
3392-3405
0.005
0
7mer
7937-7956
0.004
1
7mer
68709-68719
0.004
1
7mer
62668-62687
0.004
1
7mer
15547-15564
0.004
0
6mer
819-829
0.003
0
6mer
4285-4306
0.002
2
6mer
1694-1707
0.002
1
6mer
17681-17698
0.002
1
7mer
64045-64064
0.002
Not Conserved
6mer
30123-30139
0.002
0
6mer
89357-89367
0.002
3
6mer
86505-86521
0.002
2
6mer
52607-52620
0.002
1
6mer
65526-65537
0.002
1
6mer
55106-55117
0.002
0
6mer
20018-20034
0.001
1
6mer
25257-25279
0.001
Not Conserved
6mer
42027-42044
0.001
1
6mer
22809-22827
0.001
1
6mer
55849-55865
0.001
1
6mer
64328-64352
0.001
1
6mer
9415-9424
0.001
0
6mer
62297-62314
0.001
1
6mer
28701-28715
0.001
0
6mer
27978-27994
0.001
0
7mer
34691-34706
0.001
0
6mer
36780-36792
0.001
0
6mer
37926-37943
0.001
0
XLOC_006249
hsa-miR-190b
0.996
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013590
Biotype: transcript isomorph
Gene id: XLOC_006249
Gene Name: XLOC_006249
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
333-348
0.101
0
LINC01224
hsa-miR-190b
0.995
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1652-1676
0.042
1
8mer
1455-1481
0.018
0
7mer
1165-1181
0.017
1
8mer
1381-1393
0.011
0
7mer
544-568
0.010
0
LOC101926935
hsa-miR-190b
0.995
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4977-4999
0.076
0
7mer
4737-4751
0.015
0
6mer
569-592
0.003
Not Conserved
6mer
2322-2338
0.001
Not Conserved
RP11-1081M5.1
hsa-miR-190b
0.994
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521558
Biotype: lincRNA
Gene id: ENSG00000253369
Gene Name: RP11-1081M5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
130-153
0.091
2
6mer
264-279
0.005
0
LINC01215
hsa-miR-190b
0.994
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607746
Biotype: lincRNA
Gene id: ENSG00000271856
Gene Name: LINC01215
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2555-2570
0.083
1
6mer
2459-2480
0.005
1
6mer
2518-2537
0.005
1
XLOC_008283
hsa-miR-190b
0.993
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017573
Biotype: transcript isomorph
Gene id: XLOC_008283
Gene Name: XLOC_008283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-103
0.054
0
8mer+wobble
620-635
0.023
0
6mer
724-745
0.014
0
RP11-861A13.4
hsa-miR-190b
0.993
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110030.1
Biotype: lincRNA
Gene id: NR_110030.1 (gene)
Gene Name: RP11-861A13.4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2339-2354
0.081
1
6mer
2243-2264
0.005
1
6mer
2302-2321
0.005
1
TTTY12
hsa-miR-190b
0.992
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000413466
Biotype: lincRNA
Gene id: ENSG00000237048
Gene Name: TTTY12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-103
0.054
0
8mer+wobble
620-635
0.023
0
6mer
724-745
0.014
0
XLOC_005505
hsa-miR-190b
0.991
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011198
Biotype: transcript isomorph
Gene id: XLOC_005505
Gene Name: XLOC_005505
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1015-1032
0.082
1
6mer
934-956
0.005
0
AC006196.1
hsa-miR-190b
0.988
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447194
Biotype: lincRNA
Gene id: ENSG00000230173
Gene Name: AC006196.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2691-2706
0.047
0
9mer
2042-2066
0.024
0
8mer
1819-1838
0.012
0
RP11-1085N6.5
hsa-miR-190b
0.988
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555946
Biotype: lincRNA
Gene id: ENSG00000258776
Gene Name: RP11-1085N6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-84
0.071
6
8mer
242-259
0.012
Not Conserved
RP11-157B13.7
hsa-miR-190b
0.987
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599810
Biotype: lincRNA
Gene id: ENSG00000267872
Gene Name: RP11-157B13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-245
0.072
0
8mer
1667-1694
0.007
Not Conserved
7mer
1442-1449
0.003
Not Conserved
XLOC_013602
hsa-miR-190b
0.987
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028585
Biotype: transcript isomorph
Gene id: XLOC_013602
Gene Name: XLOC_013602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
450-476
0.081
0
XLOC_004545
hsa-miR-190b
0.986
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010086
Biotype: transcript isomorph
Gene id: XLOC_004545
Gene Name: XLOC_004545
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1432-1459
0.075
1
6mer
1219-1233
0.005
1
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