LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
LINC00564
hsa-miR-190b
0.751
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000567258
Biotype: lincRNA
Gene id: ENSG00000260094
Gene Name: LINC00564
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-247
0.029
1
LINC00341
hsa-miR-190b
0.751
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_026779.1
Biotype: sense
Gene id: NR_026779.1 (gene)
Gene Name: LINC00341
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-249
0.029
6
AP000235.2
hsa-miR-190b
0.750
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441009
Biotype: lincRNA
Gene id: ENSG00000226983
Gene Name: AP000235.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2027-2043
0.013
0
7mer
2409-2434
0.010
Not Conserved
6mer
691-713
0.005
1
MEF2C-AS1
hsa-miR-190b
0.750
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514011
Biotype: antisense
Gene id: ENSG00000248309
Gene Name: MEF2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
686-708
0.029
0
SEPT7-AS1
hsa-miR-190b
0.749
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437235
Biotype: lincRNA
Gene id: ENSG00000228878
Gene Name: SEPT7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2834-2853
0.024
1
7mer
2122-2130
0.003
0
6mer
2803-2810
0.002
2
XLOC_011818
hsa-miR-190b
0.749
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024298
Biotype: transcript isomorph
Gene id: XLOC_011818
Gene Name: XLOC_011818
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
710-726
0.018
2
7mer
1212-1233
0.007
1
6mer
989-1000
0.004
0
RP11-513O17.2
hsa-miR-190b
0.749
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519160
Biotype: lincRNA
Gene id: ENSG00000253301
Gene Name: RP11-513O17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1477-1499
0.014
Not Conserved
9mer
977-987
0.014
Not Conserved
RP11-674P19.2
hsa-miR-190b
0.749
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579651
Biotype: lincRNA
Gene id: ENSG00000264705
Gene Name: RP11-674P19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1501-1517
0.029
1
RP13-39P12.3
hsa-miR-190b
0.749
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601701
Biotype: antisense
Gene id: ENSG00000228748
Gene Name: RP13-39P12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
845-864
0.022
0
7mer
649-667
0.007
1
XLOC_002384
hsa-miR-190b
0.749
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004489
Biotype: transcript isomorph
Gene id: XLOC_002384
Gene Name: XLOC_002384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-174
0.012
1
7mer
79-92
0.008
1
6mer
1132-1148
0.005
3
6mer
1226-1243
0.003
1
RP11-899L11.1
hsa-miR-190b
0.748
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566092
Biotype: lincRNA
Gene id: ENSG00000261095
Gene Name: RP11-899L11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
710-726
0.018
2
7mer
1212-1233
0.007
1
6mer
989-1000
0.004
0
CTD-2547L16.1
hsa-miR-190b
0.748
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521775
Biotype: antisense
Gene id: ENSG00000245281
Gene Name: CTD-2547L16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
255-271
0.028
1
XLOC_006551
hsa-miR-190b
0.748
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013910
Biotype: transcript isomorph
Gene id: XLOC_006551
Gene Name: XLOC_006551
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
253-280
0.028
1
RP11-314B1.2
hsa-miR-190b
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-116
0.013
3
6mer
507-533
0.005
5
7mer
2819-2840
0.005
2
7mer
2276-2296
0.004
2
6mer
3492-3508
0.002
2
LINC00871
hsa-miR-190b
0.745
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556869
Biotype: lincRNA
Gene id: ENSG00000258700
Gene Name: LINC00871
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-129
0.028
0
RP11-442N24__B.1
hsa-miR-190b
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420776
Biotype: lincRNA
Gene id: ENSG00000229388
Gene Name: RP11-442N24__B.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-485
0.024
1
6mer
183-205
0.004
2
CTA-292E10.9
hsa-miR-190b
0.742
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7376-7388
0.010
0
7mer
5003-5023
0.004
2
7mer
14814-14831
0.003
0
6mer
11356-11370
0.003
9
6mer
18749-18769
0.003
7
6mer
9202-9209
0.002
0
6mer
10009-10029
0.001
2
6mer
5705-5723
0.001
0
RP11-141E13.1
hsa-miR-190b
0.741
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511735
Biotype: lincRNA
Gene id: ENSG00000249998
Gene Name: RP11-141E13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
176-191
0.028
0
XLOC_013866
hsa-miR-190b
0.741
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028969
Biotype: transcript isomorph
Gene id: XLOC_013866
Gene Name: XLOC_013866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4006-4030
0.028
0
RP11-94H18.1
hsa-miR-190b
0.741
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000507496
Biotype: lincRNA
Gene id: ENSG00000248964
Gene Name: RP11-94H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-318
0.021
3
7mer
963-987
0.007
1
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