LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
AC011343.1
hsa-miR-190b
0.759
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522627
Biotype: lincRNA
Gene id: ENSG00000253311
Gene Name: AC011343.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4137-4161
0.016
1
7mer
4732-4750
0.009
3
8mer+wobble
3796-3812
0.004
Not Conserved
6mer
1930-1953
0.001
1
LINC00665
hsa-miR-190b
0.758
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590657
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2561-2575
0.017
0
7mer
2429-2438
0.008
Not Conserved
6mer
782-803
0.003
0
6mer
735-754
0.001
Not Conserved
CTD-2296D1.4
hsa-miR-190b
0.758
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513219
Biotype: antisense
Gene id: ENSG00000249865
Gene Name: CTD-2296D1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
241-266
0.023
2
6mer
246-266
0.006
1
XLOC_007765
hsa-miR-190b
0.758
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016396
Biotype: transcript isomorph
Gene id: XLOC_007765
Gene Name: XLOC_007765
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
869-894
0.029
1
XLOC_005438
hsa-miR-190b
0.758
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011125
Biotype: transcript isomorph
Gene id: XLOC_005438
Gene Name: XLOC_005438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1628-1648
0.029
1
XLOC_014114
hsa-miR-190b
0.757
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029175
Biotype: transcript isomorph
Gene id: XLOC_014114
Gene Name: XLOC_014114
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
253-268
0.023
0
6mer
1678-1689
0.006
0
LINC00284
hsa-miR-190b
0.755
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000423211
Biotype: lincRNA
Gene id: ENSG00000233725
Gene Name: LINC00284
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-396
0.023
0
6mer
206-219
0.006
1
XLOC_005821
hsa-miR-190b
0.755
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012265
Biotype: transcript isomorph
Gene id: XLOC_005821
Gene Name: XLOC_005821
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
936-951
0.029
3
RP11-96K19.4
hsa-miR-190b
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2417-2441
0.018
1
7mer
2090-2116
0.011
0
MIR7515HG
hsa-miR-190b
0.755
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456028
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-512
0.029
1
FAM66C
hsa-miR-190b
0.754
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540566
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
342-367
0.016
0
6mer
366-379
0.013
0
FLJ10038
hsa-miR-190b
0.754
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026891.1
Biotype: sense
Gene id: NR_026891.1 (gene)
Gene Name: FLJ10038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-217
0.012
1
9mer
687-714
0.010
1
6mer
708-728
0.004
1
7mer
4024-4047
0.003
0
XLOC_010610
hsa-miR-190b
0.754
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022282
Biotype: transcript isomorph
Gene id: XLOC_010610
Gene Name: XLOC_010610
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-115
0.029
2
RP11-434D9.1
hsa-miR-190b
0.754
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509947
Biotype: retained_intron
Gene id: ENSG00000249364
Gene Name: RP11-434D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-158
0.029
Not Conserved
RP11-325B23.2
hsa-miR-190b
0.754
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000508616
Biotype: lincRNA
Gene id: ENSG00000251088
Gene Name: RP11-325B23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-111
0.029
0
CTD-2547L16.1
hsa-miR-190b
0.753
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517798
Biotype: antisense
Gene id: ENSG00000245281
Gene Name: CTD-2547L16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
233-249
0.029
1
XLOC_007352
hsa-miR-190b
0.753
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015976
Biotype: transcript isomorph
Gene id: XLOC_007352
Gene Name: XLOC_007352
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4015-4033
0.028
Not Conserved
6mer
1664-1681
0.001
Not Conserved
CTD-2017D11.1
hsa-miR-190b
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594934
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-399
0.029
1
FLJ34503
hsa-miR-190b
0.752
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027060.1
Biotype: lincRNA
Gene id: NR_027060.1 (gene)
Gene Name: FLJ34503
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1594-1614
0.029
1
LINC00299
hsa-miR-190b
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444688
Biotype: lincRNA
Gene id: ENSG00000236790
Gene Name: LINC00299
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-457
0.029
0
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