LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
TRERNA1
hsa-miR-190b
0.774
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000431460
Biotype: lincRNA
Gene id: ENSG00000231265
Gene Name: TRERNA1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-46
0.031
1
LINC00662
hsa-miR-190b
0.774
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586954
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
194-219
0.013
0
6mer
1386-1393
0.010
0
6mer
686-711
0.008
0
XLOC_004366
hsa-miR-190b
0.774
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9418-9436
0.026
1
6mer
12158-12175
0.002
1
6mer
11601-11623
0.001
0
6mer
9510-9519
0.001
1
LOC100505658
hsa-miR-190b
0.773
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038333.1
Biotype: antisense
Gene id: NR_038333.1 (gene)
Gene Name: LOC100505658
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2099-2125
0.031
1
LINC01330
hsa-miR-190b
0.773
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481578
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1171-1198
0.019
2
6mer
251-275
0.006
5
6mer
26-46
0.003
2
6mer
968-984
0.003
1
CTD-2547L16.1
hsa-miR-190b
0.773
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499554
Biotype: antisense
Gene id: ENSG00000245281
Gene Name: CTD-2547L16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
112-128
0.031
1
RP11-98I9.4
hsa-miR-190b
0.773
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418945
Biotype: antisense
Gene id: ENSG00000228506
Gene Name: RP11-98I9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1544-1563
0.023
3
6mer
1444-1467
0.004
2
6mer
1430-1455
0.003
0
AC084219.4
hsa-miR-190b
0.772
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592946
Biotype: antisense
Gene id: ENSG00000186019
Gene Name: AC084219.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2754-2775
0.012
1
7mer
2700-2717
0.008
0
7mer
2280-2297
0.008
1
8mer+wobble
1653-1671
0.003
1
RP11-588K22.2
hsa-miR-190b
0.772
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569449
Biotype: sense_overlapping
Gene id: ENSG00000260244
Gene Name: RP11-588K22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2261-2278
0.029
2
6mer
1001-1021
0.002
0
LOC145845
hsa-miR-190b
0.772
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_024264.1
Biotype: lincRNA
Gene id: NR_024264.1 (gene)
Gene Name: LOC145845
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2892-2918
0.020
0
8mer+wobble
1537-1558
0.006
Not Conserved
6mer
1963-1981
0.002
0
6mer
1809-1829
0.001
0
6mer
1794-1813
0.001
0
AC006946.16
hsa-miR-190b
0.771
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608373
Biotype: lincRNA
Gene id: ENSG00000273203
Gene Name: AC006946.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2482-2502
0.023
1
6mer
1746-1764
0.003
1
6mer
1905-1928
0.003
1
6mer
1767-1794
0.002
0
XLOC_012393
hsa-miR-190b
0.771
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025566
Biotype: transcript isomorph
Gene id: XLOC_012393
Gene Name: XLOC_012393
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4100-4116
0.015
1
7mer
2418-2441
0.007
1
7mer
3274-3292
0.007
1
6mer
2000-2013
0.001
0
CTB-46B19.2
hsa-miR-190b
0.770
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512875
Biotype: antisense
Gene id: ENSG00000249593
Gene Name: CTB-46B19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-31
0.030
0
XLOC_008402
hsa-miR-190b
0.770
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018127
Biotype: transcript isomorph
Gene id: XLOC_008402
Gene Name: XLOC_008402
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-99
0.030
1
MANEA-AS1
hsa-miR-190b
0.770
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564541
Biotype: antisense
Gene id: ENSG00000261366
Gene Name: MANEA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-331
0.027
2
6mer
1587-1601
0.004
1
RP11-734K23.9
hsa-miR-190b
0.769
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000613749
Biotype: lincRNA
Gene id: ENSG00000277701
Gene Name: RP11-734K23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-259
0.027
Not Conserved
6mer
1290-1315
0.003
1
AC003665.1
hsa-miR-190b
0.769
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_103857.1
Biotype: antisense
Gene id: NR_103857.1 (gene)
Gene Name: AC003665.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-193
0.014
0
8mer
510-524
0.012
1
6mer
684-702
0.005
0
SNHG14
hsa-miR-190b
0.769
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557108
Biotype: retained_intron
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-353
0.030
0
AC097467.2
hsa-miR-190b
0.769
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595229
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
755-780
0.030
0
RP11-489G11.3
hsa-miR-190b
0.769
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000563631
Biotype: lincRNA
Gene id: ENSG00000261646
Gene Name: RP11-489G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-387
0.030
1
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