LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-190b


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Gene
miRNA
Score
DIANA Links
LINC00871
hsa-miR-190b
0.787
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556071
Biotype: lincRNA
Gene id: ENSG00000258700
Gene Name: LINC00871
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-131
0.032
0
CTD-2506J14.1
hsa-miR-190b
0.787
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000499910
Biotype: lincRNA
Gene id: ENSG00000246084
Gene Name: CTD-2506J14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
832-853
0.028
0
6mer
592-609
0.004
0
AC010976.2
hsa-miR-190b
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454503
Biotype: antisense
Gene id: ENSG00000231731
Gene Name: AC010976.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
558-570
0.032
2
LINC00906
hsa-miR-190b
0.786
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587998
Biotype: lincRNA
Gene id: ENSG00000267339
Gene Name: LINC00906
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
418-436
0.021
1
7mer
595-613
0.011
1
CTD-2340D6.1
hsa-miR-190b
0.786
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523226
Biotype: sense_intronic
Gene id: ENSG00000253532
Gene Name: CTD-2340D6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
570-590
0.032
0
AC005614.3
hsa-miR-190b
0.784
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598952
Biotype: antisense
Gene id: ENSG00000269296
Gene Name: AC005614.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1894-1914
0.017
1
7mer
991-1004
0.013
1
6mer
2385-2392
0.002
0
AC010976.2
hsa-miR-190b
0.783
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595561
Biotype: antisense
Gene id: ENSG00000231731
Gene Name: AC010976.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-688
0.032
2
RP11-734I18.1
hsa-miR-190b
0.783
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513211
Biotype: lincRNA
Gene id: ENSG00000251129
Gene Name: RP11-734I18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
434-453
0.032
Not Conserved
AC097467.2
hsa-miR-190b
0.782
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000599555
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1207-1232
0.032
0
AC016738.4
hsa-miR-190b
0.781
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452364
Biotype: antisense
Gene id: ENSG00000223947
Gene Name: AC016738.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
141-161
0.031
0
AC012593.1
hsa-miR-190b
0.781
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588944
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-682
0.031
1
KIAA0196-AS1
hsa-miR-190b
0.781
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519140
Biotype: antisense
Gene id: ENSG00000253167
Gene Name: KIAA0196-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-259
0.018
4
7mer
507-521
0.014
1
ERICH3-AS1
hsa-miR-190b
0.780
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612390
Biotype: antisense
Gene id: ENSG00000234497
Gene Name: ERICH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4455-4475
0.015
0
6mer
4735-4755
0.006
1
6mer
4325-4340
0.005
1
6mer
325-335
0.004
1
6mer
3139-3162
0.002
1
XLOC_009517
hsa-miR-190b
0.779
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019720
Biotype: transcript isomorph
Gene id: XLOC_009517
Gene Name: XLOC_009517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-610
0.031
2
AC092652.1
hsa-miR-190b
0.778
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413315
Biotype: antisense
Gene id: ENSG00000231758
Gene Name: AC092652.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-45
0.031
5
MIR7515HG
hsa-miR-190b
0.778
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593277
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9-30
0.031
1
IGSF11-AS1
hsa-miR-190b
0.777
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477009
Biotype: antisense
Gene id: ENSG00000239877
Gene Name: IGSF11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1552-1573
0.029
1
6mer
707-722
0.002
0
AC003665.1
hsa-miR-190b
0.776
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000451140
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
293-305
0.016
0
8mer
622-636
0.010
1
6mer
796-814
0.004
0
CTD-2024I7.13
hsa-miR-190b
0.776
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502205
Biotype: antisense
Gene id: ENSG00000246422
Gene Name: CTD-2024I7.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2099-2125
0.031
1
LINC00906
hsa-miR-190b
0.776
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589466
Biotype: lincRNA
Gene id: ENSG00000267339
Gene Name: LINC00906
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-190b
Sequence: ugauauguuugauauuggguu
MirBase ID: MIMAT0004929
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-189
0.021
1
7mer
348-366
0.010
1
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